View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14317_low_22 (Length: 256)
Name: NF14317_low_22
Description: NF14317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14317_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 251
Target Start/End: Original strand, 50886523 - 50886631
Alignment:
| Q |
141 |
atttaattacacacacaatgaatttggtcaaactctagttcacgtatacttttannnnnnnngaataatctagttcacagagacctgaaagcaagcaaaa |
240 |
Q |
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| T |
50886523 |
atttaattacacacacaatgaatttggtcaaactctagttcacgtatactttta--ttttttgaataatctagttcacagagacttgaaagcaagcaaaa |
50886620 |
T |
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| Q |
241 |
tattcttggac |
251 |
Q |
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|| | |||||| |
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| T |
50886621 |
taatgttggac |
50886631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 50886310 - 50886365
Alignment:
| Q |
93 |
aaccattagtttaataaactatataaaatattttactttgttttttaaatttaatt |
148 |
Q |
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| T |
50886310 |
aaccattagtttaataaactatataaaatattttactttgttttttaaatttaatt |
50886365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 50886243 - 50886288
Alignment:
| Q |
15 |
catggtggcaacattaaatctgatgtttaaaaccattagtaaattggatt |
64 |
Q |
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| T |
50886243 |
catggtgccaacattaaa----atgtttaaaaccattagtaaattggatt |
50886288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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