View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14317_low_24 (Length: 245)
Name: NF14317_low_24
Description: NF14317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14317_low_24 |
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| [»] scaffold1064 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 9239423 - 9239526
Alignment:
| Q |
131 |
agtgaatattgttgcttattttgaatttcttattattttaggagagaaacgatgttattgagaaaaataaaaagcttgagcgcaagaactggtatgtcat |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9239423 |
agtgaatattgttgcttattttgaatttcttattattttaggagagaaacgttgttattgagaaaaataaaaagcttgagcccaagaactggtatgtcat |
9239522 |
T |
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| Q |
231 |
tcat |
234 |
Q |
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|||| |
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| T |
9239523 |
tcat |
9239526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 9238848 - 9238889
Alignment:
| Q |
58 |
gatcatcctaagttagttagttataactaaccaacaagataa |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
9238848 |
gatcatcctaagttagttagttataactaaccaacaagataa |
9238889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 9165020 - 9164959
Alignment:
| Q |
170 |
aggagagaaacgatgttattgagaaaaataaaaagcttgagcgcaagaactggtatgtcattca |
233 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
9165020 |
aggagagaaatgatgttaatgagaaaaataaaaagcttga--gcaagaagtggtatgtcattca |
9164959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 9181220 - 9181280
Alignment:
| Q |
172 |
gagagaaacgatgttattgagaaaaataaaaagcttgagcgcaagaactggtatgtcattcat |
234 |
Q |
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|||||||| ||||||| |||||| |||||||||||||| ||||||| ||||||||||||||| |
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| T |
9181220 |
gagagaaatgatgttaatgagaataataaaaagcttga--gcaagaagtggtatgtcattcat |
9181280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 9261248 - 9261285
Alignment:
| Q |
135 |
aatattgttgcttattttgaatttcttattattttagg |
172 |
Q |
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||||||||||||||||||||||||||| |||||||||| |
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| T |
9261248 |
aatattgttgcttattttgaatttctttttattttagg |
9261285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 9156712 - 9156773
Alignment:
| Q |
171 |
ggagagaaacgatgttattgagaaaaataaaaagcttgagcgcaagaactggtatgtcattcat |
234 |
Q |
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||||| ||| |||| || ||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
9156712 |
ggagataaatgatggtaatgagaaaaataaaaagcttcagc--aagaactggtatgtcattcat |
9156773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 9261312 - 9261364
Alignment:
| Q |
172 |
gagagaaacgatgttattgagaaaaataaaaagcttgagcgcaagaactggtatg |
226 |
Q |
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|||||| |||||||||||||||||||| |||| ||||| ||||||||||||||| |
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| T |
9261312 |
gagagagacgatgttattgagaaaaatgaaaatcttga--gcaagaactggtatg |
9261364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 9165085 - 9165048
Alignment:
| Q |
135 |
aatattgttgcttattttgaatttcttattattttagg |
172 |
Q |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
9165085 |
aatattgttgcttattttgatgttcttattattttagg |
9165048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 9181153 - 9181190
Alignment:
| Q |
135 |
aatattgttgcttattttgaatttcttattattttagg |
172 |
Q |
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|||| |||||||||||||||| |||||||||||||||| |
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| T |
9181153 |
aatactgttgcttattttgaagttcttattattttagg |
9181190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 135 - 234
Target Start/End: Original strand, 2750 - 2849
Alignment:
| Q |
135 |
aatattgttgcttattttgaatttcttattattttaggagagaaacgatgttattgagaaaaataaaaagcttgagcgcaagaactggtatgtcattcat |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2750 |
aatattgttgcttattttgaatttcttattattttaggagagaaaggatgatattgagaaaaataaaaagcttgagcgcaagaactggtatgtcattcat |
2849 |
T |
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