View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14317_low_28 (Length: 235)
Name: NF14317_low_28
Description: NF14317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14317_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 5199229 - 5199030
Alignment:
| Q |
19 |
catatagtattagaccattcttccaacaatttccgattgtcttatttaatagaaaaggtaaaacatgtattgccatgtttctgttttatgt-cagacaca |
117 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5199229 |
catatagtattagaccatgcttccaacaatttccgattgtcttatttaatagaaaaggtaaaacatgtattgccatgtttctgttttatgtgcagacaca |
5199130 |
T |
|
| Q |
118 |
tgcatttatgcttaaaagatcttactttttatcaatatataaaatataattattttgtggagcttctaactctattt-ttaatcatctgaatctgcagtt |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| |||| ||| ||||||| |
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| T |
5199129 |
tgcatttatgcttaaaagatattactttttatcaatatataaaacataattgttttgtggagcttctaactctatttgttaataatctaaatatgcagtt |
5199030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 5194858 - 5195059
Alignment:
| Q |
19 |
catatagtattagaccattcttccaacaatttccgattgtcttatttaatagaaaaggtaaaacatgtattgccatgtttctgttttatgtcagacacat |
118 |
Q |
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|||||||||||||||||| |||||||||||| |||||||| ||| |||||||||| |||||| ||||||| |||||||| ||||||||||||||||| |
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| T |
5194858 |
catatagtattagaccatgcttccaacaattggcgattgtcctatataatagaaaaagtaaaaattgtattgtcatgtttccattttatgtcagacacat |
5194957 |
T |
|
| Q |
119 |
gcatttatgcttaaaagatcttactttttatcaatatataaaatataattattttgtggagcttctaactctattt-ttaatcatctgaatctgcagttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5194958 |
gcatttatgcttaaaagatcttactttttatcaatatataaaatataattattttgtggagcttctaactctatttgttaatcatctgaatctgcagttc |
5195057 |
T |
|
| Q |
218 |
tt |
219 |
Q |
| |
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|| |
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|
| T |
5195058 |
tt |
5195059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 5177421 - 5177620
Alignment:
| Q |
19 |
catatagtattagaccattcttccaacaatttccgattgtcttatttaatagaaaaggtaaaacatgtattgcc---atgtttctgttttatgtcagaca |
115 |
Q |
| |
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|||||||||||||||||| ||||| |||||| ||||||| |||||||| ||||| | |||| ||||||| | ||||||| ||||||||||||| | |
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| T |
5177421 |
catatagtattagaccatgcttcctacaattggtgattgtcctatttaatcgaaaaag-aaaaattgtattgtcatgatgtttccgttttatgtcaga-a |
5177518 |
T |
|
| Q |
116 |
catgcatttatgcttaaaagatcttactttttatcaatatataaaatataattattttgtggagcttctaactctattt-ttaatcatctgaatctgcag |
214 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5177519 |
catgcatttatgtttaaaagattttacttttgatcaatatataaaatatgattgttttgtggagcttctaactctatttgttaatcatctgaatctgcag |
5177618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 5206916 - 5207021
Alignment:
| Q |
86 |
tattgccatgtttctgttttatgtcagacacatgcatttatgcttaaaagatctt-actttttatcaatatataaaatataattattttgtggagcttct |
184 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||| || |||||||||||||||||| ||||||||| || |||||||||||| |
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| T |
5206916 |
tattgccatgttttcgttttatgtcagacacatccatttatgcttaaaagatgttcactttttatcaatatatagaatataattgttgtgtggagcttct |
5207015 |
T |
|
| Q |
185 |
aactct |
190 |
Q |
| |
|
|||||| |
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|
| T |
5207016 |
aactct |
5207021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 6231452 - 6231572
Alignment:
| Q |
102 |
ttttatgtcagacacatgcatttatgcttaaaagatcttactttttatcaatatataaaatata-------attattttgtggagcttctaactctattt |
194 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
6231452 |
ttttatgtcagaca--tgcatttatgcttaaaagattttactttttatcaatatataaaatataaaatatgattgttttgtggagcttctaactctattt |
6231549 |
T |
|
| Q |
195 |
-ttaatcatctgaatctgcagtt |
216 |
Q |
| |
|
|||||||||| ||| ||||||| |
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| T |
6231550 |
gttaatcatctaaatatgcagtt |
6231572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 5184988 - 5185062
Alignment:
| Q |
141 |
actttttatcaatatataaaatataattattttgtggagcttctaactctattt-ttaatcatctgaatctgcagtt |
216 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||| ||||| ||||||| ||||| |||||||||||||||| |
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| T |
5184988 |
actttttattaatatataaaata--attattttgtggagcgtctaattctatttgttaattatctgaatctgcagtt |
5185062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 1796002 - 1795949
Alignment:
| Q |
162 |
tataattattttgtggagcttctaactctattt-ttaatcatctgaatctgcag |
214 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||| ||||||||| |
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| T |
1796002 |
tataattattttatggagcttctaactctatttgttaatcatctcaatctgcag |
1795949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 5184741 - 5184857
Alignment:
| Q |
31 |
gaccattcttccaacaatttccgattgtcttatttaatagaaaaggtaaaacatgtattgccatgtttctgttttatgtcagacacatgcatttatgctt |
130 |
Q |
| |
|
|||||| ||||| |||||| ||||||| |||||||| |||| |||||| || ||| ||||||| |||||||||||||| ||||||||||||| |
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| T |
5184741 |
gaccatgcttcctacaattggtgattgtcctatttaatcaaaaaagtaaaaattgcattaccatgttatcattttatgtcagacatgtgcatttatgctt |
5184840 |
T |
|
| Q |
131 |
aaaagatcttacttttt |
147 |
Q |
| |
|
||||||| ||||||||| |
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|
| T |
5184841 |
aaaagattttacttttt |
5184857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 5178453 - 5178653
Alignment:
| Q |
19 |
catatagtattagaccattcttccaacaatttccgattgtcttatttaatagaaaaggtaaaacatgtattgccatgtttctgttttatgtcagacacat |
118 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| ||||||||||||| ||||||| |||||| ||||||||| |||||||||||||| ||| |
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|
| T |
5178453 |
catatagtattagaccatgcttccaacaattggcgattgtcctatttaatagaaatggtaaaaattgtattcccatgtttccgttttatgtcagacgcat |
5178552 |
T |
|
| Q |
119 |
gcatttatgcttaaaagatcttac---tttttatcaatatataaaatataattattttgtggagcttctaactctatttttaatcatctgaatctgcagt |
215 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
5178553 |
gcatttaggcttaaaagattttacttttttttattaatatataaaatataattgttttgtggagcttctaactctatttttaatcatctaaatctgcagt |
5178652 |
T |
|
| Q |
216 |
t |
216 |
Q |
| |
|
| |
|
|
| T |
5178653 |
t |
5178653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 5178682 - 5178757
Alignment:
| Q |
144 |
ttttatcaatatataaaatataattattttgtggagcttctaactctatttttaatcatctgaatctgcagttctt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| |
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|
| T |
5178682 |
ttttatcaatatataaaatataattattttgtggagcatctaactctattcttaatcgtctgaatctgcagttctt |
5178757 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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