View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14317_low_3 (Length: 675)
Name: NF14317_low_3
Description: NF14317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14317_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 273 - 614
Target Start/End: Original strand, 41265100 - 41265441
Alignment:
| Q |
273 |
catcattcatttgtttattactatttattatattttccataccaagttcgttaatgttaggtatttgagtattgacttcattgtttcttctgtatatatg |
372 |
Q |
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| T |
41265100 |
catcattcatttatttattactatt-attttatttcccataccaagttcgttaatgttggatatttgagtatcgacttcattgtttctcctgtatatatg |
41265198 |
T |
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| Q |
373 |
ttttgtagcttttatannnnnnnn-aagtcttctctcagtagggtaagttattggctttgttaattattcatctcaaattccagccactaaat----ttc |
467 |
Q |
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| T |
41265199 |
ttttgcagcttttatatttttttttaagtcttctctcagtagggtaagttattggctttgttaattattcatctcaaattccagccactaaacaaacttc |
41265298 |
T |
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| Q |
468 |
ttgaaagaaaaaa-tatcagtcacaaactctagttttaccttagaatttaaatagtatagtacttnnnnnnngataaatgtatgagaggaaattgaaact |
566 |
Q |
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| T |
41265299 |
ttgaaagaaaaaaatattagtcacaaactctagttttaccttagaatttaaatagtatagtacttaaaaaaagataaatgtatgagaggaaattgaaact |
41265398 |
T |
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| Q |
567 |
attttacctatgaattgatttgatttattacctatgaaaagatgtgtc |
614 |
Q |
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| T |
41265399 |
attttacctatgaa-----ttgatttattacctatgaaaagatgtgtc |
41265441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 41264879 - 41265090
Alignment:
| Q |
20 |
gagaggggatgagaactgtatgcaaagctgtgggannnnnnnaaggctgcaaaaccattattgaagttgcttcagtaaacatctcacac--ttcttgagg |
117 |
Q |
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| T |
41264879 |
gagaggggatgagaactgtatgcaaagctgtgggatttttttaaggctgcaaaaccagtattgaagttgcttcagtaaacatctcacacacttcttgagg |
41264978 |
T |
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| Q |
118 |
atttcttcgacacttatttaccaatactttt-gcaatatctccaaaacaaatactcgtgtttgaaaagcttacatatgcaaaatagttgtagataaatta |
216 |
Q |
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| T |
41264979 |
atttcttcgacacttatttaccaatactttttgcaatatctccaaaacaaatactcgtgtttgaaaagcttacatatgcaagatagttgtagataaatta |
41265078 |
T |
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| Q |
217 |
tacaacgaacga |
228 |
Q |
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| T |
41265079 |
taaaacgaacga |
41265090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 634 - 663
Target Start/End: Original strand, 41265442 - 41265471
Alignment:
| Q |
634 |
aagtatagactgtttatctcacctttgcta |
663 |
Q |
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| T |
41265442 |
aagtatagactgtttatctcacctttgcta |
41265471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 357
Target Start/End: Original strand, 28622903 - 28622934
Alignment:
| Q |
326 |
atgttaggtatttgagtattgacttcattgtt |
357 |
Q |
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| T |
28622903 |
atgttaggtatttgagtattgacttcattgtt |
28622934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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