View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14317_low_4 (Length: 522)
Name: NF14317_low_4
Description: NF14317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14317_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 206 - 411
Target Start/End: Complemental strand, 39170927 - 39170722
Alignment:
| Q |
206 |
cactaaagttgaataaaaatataaagatgggtttgtattagatgaaggcattaattaaagtcttatgaataaggaaataaatgaaaagtgtatatagtta |
305 |
Q |
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| T |
39170927 |
cactaaagttgaataaaaatagaaagatgggtttgtattagatgaaggcattaattaaagtcttatgaataaggaaataaatgaaaagtgtatatagtta |
39170828 |
T |
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| Q |
306 |
gttacacccgcgctcacacactctcatctcattcttcctcttcttgttttcgtacccttctcctccggaaacggtgttcttccagtgattctaatcactc |
405 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39170827 |
gttacacccgcgcttacacactctcatctcattcttcctcttcttgttttcgtacccttctcctccggaaacggtgttcttccagtgattctaatcactc |
39170728 |
T |
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| Q |
406 |
tcacat |
411 |
Q |
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|||||| |
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| T |
39170727 |
tcacat |
39170722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 39171445 - 39171312
Alignment:
| Q |
2 |
gaatatatatcacctgagttcaaactttctccacttttccatgtttaaagtgtatgagttaaatacataggttttctcataaaaaataagtcaatttaat |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39171445 |
gaatatatatcacctgagttcaaactttctccacttttccatgtttaaagtgtatgagttaaatacataggttttctcataaaaaataagtcaatttaat |
39171346 |
T |
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| Q |
102 |
tttgtttgtaaatcaatcaacccaaccaaaccca |
135 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
39171345 |
tttgtttgtaaatcaatcaacccaacccaaccca |
39171312 |
T |
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