View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14317_low_5 (Length: 446)
Name: NF14317_low_5
Description: NF14317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14317_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 428
Target Start/End: Complemental strand, 39286287 - 39285874
Alignment:
| Q |
15 |
aatatcaactgtaacacgagttcgattcttgggaaaatacactccatgttaacaaactatgctaacctcaggacaacatgcagaagtacttcttttttac |
114 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39286287 |
aatatcaactgtaacacgagttcgatctttgggaaaatacactccatgttaacaaactatgctaacctcaggacaacatgcagaagtacttcttttttac |
39286188 |
T |
|
| Q |
115 |
cggattatgaaattgtttgnnnnnnnnnnnnnnnaacaaagacagaatagtagaaatttgttttttaggagagaatagtagaagattgttagtatttatt |
214 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39286187 |
cggattatgaaattgtttgttttttatattttttagcaaagacagaatagtagaaatttgttttttaggagagaatagtagaagattgttagtatttatt |
39286088 |
T |
|
| Q |
215 |
ccctttcttgatatatattcgttgtacgtgtaggttgttgtacatggacctgagtagatctaaaacgtggcacccaccaccacatttatggggatgtttg |
314 |
Q |
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| T |
39286087 |
cactttcttgatatatattcgttgtacatgtaggttgttgtacatggacctgagtagatctaaaacgtggcacccaccaccacatttatggggatgtttg |
39285988 |
T |
|
| Q |
315 |
tgatctaaatattcctcattattctttttgaatcattttgctaactcaaacaagaacagaggaatataataaatctaggagaatgcacaatgtcgcacat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39285987 |
tgatctaaatattcctcattattctttttgaatcattttgctaactcaaacaagaacagaggaatataataaatctaggagaatgcacaatgtcgcacat |
39285888 |
T |
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| Q |
415 |
cacggggtcggtgg |
428 |
Q |
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| T |
39285887 |
cacggggtcggtgg |
39285874 |
T |
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