View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14317_low_6 (Length: 445)
Name: NF14317_low_6
Description: NF14317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14317_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 114 - 430
Target Start/End: Complemental strand, 36922516 - 36922202
Alignment:
| Q |
114 |
agagtatattttgtactctcttttatttacaattatacatttgatatttttaacacataaaaaacacaactcatttatcactctttcctacagccacctg |
213 |
Q |
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| T |
36922516 |
agagtatattttgtactct--tttatttacaattatacatttgatatttttaacacataaaaaacacaactcatatatcactctttcctacagccacctg |
36922419 |
T |
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| Q |
214 |
catatgttattattcgaatagttgcagctttacatatattgacattcttttaaactgtgtatttaaaatgtaaaaataatgaaaaaccacaatgagcact |
313 |
Q |
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| T |
36922418 |
catatgttattattcgaatagttgcagctttacatatattgacattcttttaaactgtgtatttaaaatgtaaaaataatgaaaaaccacaatgagcact |
36922319 |
T |
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| Q |
314 |
ttagtcgttacaaagaaaaattcagaaccagcctacttttcaagaaagctcaaaacctacttccaaatgaataaatggatacttttaaatacaatcaaac |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36922318 |
ttagtcgttacaaagaaaaattcagaaccagcctacttttcaagaaagctcaaaacctacttccaaatgaataaatggatactttaaaatacaatcaaac |
36922219 |
T |
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| Q |
414 |
aagtgatcatgtactat |
430 |
Q |
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| T |
36922218 |
aagtgatcatgtactat |
36922202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 36922649 - 36922538
Alignment:
| Q |
17 |
atatgaactcgttatattgtatatatccatagatattaggctataatgttgggtatatgttgtgctaggtatttaatttgtacaatttgtaatgtttaga |
116 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36922649 |
atatgaactcgttatattgtatacatccatagattttaggctataatgttgggtatatgttgtgctaggtatttaatttgtacaatttgtaatgtttaga |
36922550 |
T |
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| Q |
117 |
gtatattttgta |
128 |
Q |
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|||||||||||| |
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| T |
36922549 |
gtatattttgta |
36922538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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