View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14318_high_12 (Length: 305)
Name: NF14318_high_12
Description: NF14318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14318_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 30 - 287
Target Start/End: Complemental strand, 52209908 - 52209655
Alignment:
| Q |
30 |
taaagcataagagttgtaaatgtaaattgataatttagttaataatcttgatctgactacttgtttggttaataattttacaaaattaatttctatagga |
129 |
Q |
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| T |
52209908 |
taaagcataagagttgtaaatgtaaattgataatttagttaataatcttgatctgactacttg----gttaatc-ttttacaaaattaatttctatagga |
52209814 |
T |
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| Q |
130 |
tggggtggtctatagatgggaaggatggcgttggagttttgcctgggaggaggatttagggtgtgaatgtaatatatata-nnnnnnnnnnnnngtgccg |
228 |
Q |
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| T |
52209813 |
tggggtggtctatagatgggaaggatggcgttggagttttgcttgggaggaggatttagggtgtgaatgtaatatatatatattttttgtttttgtaccg |
52209714 |
T |
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| Q |
229 |
gtttctgatccatcaacgatgaacgattaatccaactcatgcgtagaagcgtgcgcact |
287 |
Q |
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| T |
52209713 |
gtttctgacccatcaatgatgaacgattaatctgactcatgcgtagaagcgtgcgcact |
52209655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 31635758 - 31635817
Alignment:
| Q |
230 |
tttctgatccatcaacgatgaacgattaatccaactcatgcgtagaagcgtgcgcactga |
289 |
Q |
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| T |
31635758 |
tttctgacccatcaaagatgggcgattaatccaactcatgcgtagagacatgcgcactga |
31635817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 21375449 - 21375389
Alignment:
| Q |
228 |
ggtttctgatccatcaacgatgaacgattaatccaactcatgcgtagaagcgtgcgcactg |
288 |
Q |
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| T |
21375449 |
ggtttccgatccatcaaagatggacgactaatccgactcatgcgtagaagcatgcgcactg |
21375389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 43925613 - 43925551
Alignment:
| Q |
227 |
cggtttctgatccatcaacgatgaacgattaatccaactcatgcgtagaagcgtgcgcactga |
289 |
Q |
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| T |
43925613 |
cggtttctgatccatcaaaggtaaacaactaatccagctcatgcgtagaggcatgcgcactga |
43925551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 30410547 - 30410486
Alignment:
| Q |
227 |
cggtttctgatccatcaacgatgaacgattaatccaactcatgcgtagaagcgtgcgcactg |
288 |
Q |
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| T |
30410547 |
cggtttccgacccaccaaagatgagcgattaatccagctcatgcgtagaggcatgcgcactg |
30410486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 5029917 - 5029857
Alignment:
| Q |
229 |
gtttctgatccatcaacgatgaacgattaatccaactcatgcgtagaagcgtgcgcactga |
289 |
Q |
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| T |
5029917 |
gtttccgacccatcaaagatgggcgactaatccaactcatgcgtagaggcatgcgcactga |
5029857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 15285745 - 15285802
Alignment:
| Q |
230 |
tttctgatccatcaacgatgaacgattaatccaactcatgcgtagaagcgtgcgcact |
287 |
Q |
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| T |
15285745 |
tttctgatccatcaaaggtgaacgactaatccaacttatgtgtagaggcatgcgcact |
15285802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 11763324 - 11763376
Alignment:
| Q |
226 |
ccggtttctgatccatcaacgatgaacgattaatccaactcatgcgtagaagc |
278 |
Q |
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|||||||||||||||| || ||||| |||||||||| |||| |||||| |||| |
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| T |
11763324 |
ccggtttctgatccattaatgatgagcgattaatccgactcgtgcgtaaaagc |
11763376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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