View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14318_high_2 (Length: 758)

Name: NF14318_high_2
Description: NF14318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14318_high_2
NF14318_high_2
[»] chr4 (1 HSPs)
chr4 (17-741)||(47660271-47660996)


Alignment Details
Target: chr4 (Bit Score: 665; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 17 - 741
Target Start/End: Complemental strand, 47660996 - 47660271
Alignment:
Q  17 atttatcataccacaaatatattaaggtataattaa-tcttcatatcttaatataaataaatggaacataattagccagcattcaacnnnnnnncatata 115  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||       ||||||    
T  47660996 atttatcataccacaaatatattaaggtataatttagtcttcatatcttaatgtaaataaatggaacataattagccagcattcaactttttttcatata 47660897  T
Q  116 gagaaacaaattaacgattatgaacttacctgagtcatttcacctttgagacggtttaatctatcagcatttgggtcggtagagtaataatccatctgtt 215  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47660896 gagaaacaaattaacgattgtgaacttacctgagtcatttcacctttgagacggtttaatctatcagcatttgggtcggtagagtaataatccatctgtt 47660797  T
Q  216 ggctgaggatccttgagaattcatcattcatggtataggcaagagctgaaagaattgcaccggcatatgtcttcacaaatctattatgaatatcttcaag 315  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47660796 ggctgaggatccttgagaattcatcattcatggtataggcaggagctgaaagaattgcaccggcatatgtcttcacaaatctattatgaatatcttcaag 47660697  T
Q  316 aaatgaaaatggaatccttcctgcagtcattcaaacagaacatttgttcaagttcattcaaggatggtaaacaacataatatttggatcataattgtttc 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47660696 aaatgaaaatggaatccttcctgcagtcattcaaacagaacatttgttcaagttcattcatggatggtaaacaacataatatttggatcataattgtttc 47660597  T
Q  416 attcaattgaccaatccaaattccaaacacagtcaataaaaataagagagatagaagaaattgatgcatacttccgaatgcttcatcagccatacaaaga 515  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47660596 attcaattgaccaatccaaattccaaacacaatcaataaaaataagagagatagaagaaattgatgcatacttccgaatgcttcatcagccatacaaaga 47660497  T
Q  516 accgtgaggccatcggttcttctaacatgaaaaacataacgatcgtgtgaaaatgaaacattactatcattgtaactattagtcccttgattaatctggt 615  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47660496 accgtcaggccatcggttcttctaacatgaaaaacataacgatcgtgtgaaaatgaaacattgctatcattgtaactattagtcccttgattaatctggt 47660397  T
Q  616 taagtatttgtttagctacaacacttgcattgctttgaatcacgctaaactcggccaaaacaacctgtccccttgccaccattccatacaatatccccat 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47660396 taagtatttgtttagctacaacacttgcattgctttgaatcacgctaaactcggccaaaacaacctgtccccttgccaccattccatacaatatccccat 47660297  T
Q  716 attgatgctcaaaacatgtaactttt 741  Q
    ||||||||||||||||||||||||||    
T  47660296 attgatgctcaaaacatgtaactttt 47660271  T

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