View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14318_high_3 (Length: 673)
Name: NF14318_high_3
Description: NF14318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14318_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 15 - 438
Target Start/End: Original strand, 27306511 - 27306934
Alignment:
| Q |
15 |
tcacaagaaactggcacgtacacttatcaatttttattttaaaattttggtttcacgtacacttatcaatttggtatacattattatttctttatttcca |
114 |
Q |
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| T |
27306511 |
tcacaagaaactggcacgtacacttatcaatttttattttaaaattttggtttcacgtacacttatcaatttggtatacattattatttctttatttcca |
27306610 |
T |
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| Q |
115 |
aatttgccctacttgcatattataattttttcctatactatttggcaccaacaataatcagaaaaaggtgtaccacacatctttgttagccgtctttttg |
214 |
Q |
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| T |
27306611 |
aatttgccctacttgcatattataattttttcctatactatttggtaccaacaataatcagaaaaaggtgtaccacacatctttgttagccgtctttttg |
27306710 |
T |
|
| Q |
215 |
tgttaatgtgctcgtgaactattaagtctccactcgtgaacttcatcaatgcacacaacacatgattgattggctttgcttctgatccattatttgtgaa |
314 |
Q |
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| T |
27306711 |
tgttaatgtgctcgtgaactattaagtctccactcgtgaacttcatcaatgcacacaacacatgattgattggctttgcttctgatccattatttgtgaa |
27306810 |
T |
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| Q |
315 |
tatgtttcaaagcaaccaaataaagggtaaacattaaacaatttgaagctatgatcatccattcagccaccaaaatatggcccataacaatttgttagaa |
414 |
Q |
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| T |
27306811 |
tatgtttcaaagcaaccaaataaagggtaattattaaacaatttgaagctatgatcatccattcagccaccaaaatatggcccataacaatttgttagaa |
27306910 |
T |
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| Q |
415 |
agattcctatataactttgtgtct |
438 |
Q |
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| T |
27306911 |
agattcctatataactttttgtct |
27306934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 455 - 673
Target Start/End: Original strand, 27306986 - 27307204
Alignment:
| Q |
455 |
ttttggattagacatgtcttggtatcggataagtgttggtatccgactctgacacgacacttataattattatcattgtcgacgtatcaatatttgtatt |
554 |
Q |
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| T |
27306986 |
ttttggattagacgtgtcttggtatcggataagtgttggtatccaactttgacacaacacttataattattatcattgtcgacgtatcagtgtttgtatc |
27307085 |
T |
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| Q |
555 |
gtgtcaggtgtttatgtatgtacttcatagttaattatacatctcttctcaataagaattaattattatagtattagatactatggaacccgtttattaa |
654 |
Q |
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| T |
27307086 |
gtatcaggtgtttatgtatgtccttcattgttaattatacatctcttctcaataagaattgattattatagcattagatactatggaacccgtttattaa |
27307185 |
T |
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| Q |
655 |
tgtggggtcgaattttcat |
673 |
Q |
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||||||||| |||||||| |
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| T |
27307186 |
tgtggggtcacattttcat |
27307204 |
T |
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Back To:
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