View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14318_high_4 (Length: 648)
Name: NF14318_high_4
Description: NF14318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14318_high_4 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 557; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 18 - 648
Target Start/End: Complemental strand, 27512199 - 27511561
Alignment:
| Q |
18 |
tcaaagtctctccatcgccccatcgtttgttctctccttcgccccttcgccttttacgcttaccgctattttaaatccaatccccatcaccttcgccccg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27512199 |
tcaaagtctctccatcgccccatcgtttgttctctccttcgccccttcgccttttacgcttaccgctattttaaatccaatccccatcaccttcgccccg |
27512100 |
T |
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| Q |
118 |
ttgcctcttccgcttacagctcttttaacaccaacaccatgccccctctccttcgccctgtagtcgcctcttcttcttctagtgcttaccgctcttctaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27512099 |
ttgcctcttccgcttacagctcttttaacaccaacgccatgccccctctccttcgccctgtagtcgcctcttcttcttctagtgcttaccgctcttctaa |
27512000 |
T |
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| Q |
218 |
caccaagacggtcgacgatcg------------ctcgttccctcatataaatatgtatccccactcactctcctctattaccgtcccgtctgccggtcac |
305 |
Q |
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| T |
27511999 |
ccccaagacagtcgccgatcgtctctccgatagctcgttccctcatataaatatgtatccccactcactctcctctcttaccgtcccgtctgccggtcac |
27511900 |
T |
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| Q |
306 |
atctcaaagtctctccttctccccatcgtcttttctctccttcgctccatcaccctttcctctcttactgtctcctccgccaatctcatctcaaagtctt |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27511899 |
atctcaaagtctctccttctccccatcgtcttttctctccttcgctccatcgccctttcctctcttactgtcttctccgccaatctcatctcaaagtctt |
27511800 |
T |
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| Q |
406 |
tccttcgccccatcgccccctcttctctcacagtctcctcccccggtctcatctcaaagtcttacctttaccccatcgtcttgtctgtccttcgcccctc |
505 |
Q |
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| T |
27511799 |
tccttcgccccatcgccccctcttctctcacagtctcctcccccggtctcatctcaaagtcttacctttaccccatcgtcttgtctgtccttcgcccctc |
27511700 |
T |
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| Q |
506 |
ttaccgctattttaaagccaatccccatctcattagccccttcgccccttttaatactagtggcatgcctcagaacgctgacactaaccgcaatggtctt |
605 |
Q |
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| T |
27511699 |
ttaccgctattttaaagccaatccccatctcattagccccttcgccccttttaatactagtggcatgcctcagaacgctgacactaaccgcaatggtctt |
27511600 |
T |
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| Q |
606 |
gtctcaggtagatgttatatatcgcccattctaatcttcattt |
648 |
Q |
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| T |
27511599 |
gtctcaggtagatgt----tatcgcccattctaatcttcattt |
27511561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 27512210 - 27512158
Alignment:
| Q |
298 |
ccggtcacatctcaaagtctctccttctccccatcgtcttttctctccttcgc |
350 |
Q |
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| T |
27512210 |
ccggtctcctctcaaagtctctccatcgccccatcgtttgttctctccttcgc |
27512158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 376 - 623
Target Start/End: Original strand, 77329 - 77589
Alignment:
| Q |
376 |
tctcctccgccaatctcatctcaaagtctttccttcgccccatcgccccctcttctctcacagtctcctcccccggtctcatctcaaagtcttaccttta |
475 |
Q |
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|||| ||||||| |||||| ||||||| |||||||| |||||| ||| ||||||| | ||||||||||||||||||||||||||||||||||| ||| | |
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| T |
77329 |
tctcttccgccagtctcatatcaaagtatttccttcaccccattgccatctcttctataacagtctcctcccccggtctcatctcaaagtcttatcttca |
77428 |
T |
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| Q |
476 |
ccccat-cgtcttgtctgtccttcgcc------------cctcttaccgctattttaaagccaatccccatctcattagccccttcgccccttttaatac |
562 |
Q |
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| T |
77429 |
tcccatgggtcttttctgtcattcgtcccgtcgctagttcctcctaccgctatttcaaagccaatccccatctcctaagccctgtcgcctcttttgatat |
77528 |
T |
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| Q |
563 |
tagtggcatgcctcagaacgctgacactaaccgcaatggtcttgtctcaggtagatgttat |
623 |
Q |
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| T |
77529 |
caatggcatgccccaaaacgcggacactcaccgcaatggtcttgtatcaggtagatcttat |
77589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 77283 - 77323
Alignment:
| Q |
315 |
tctctccttctccccatcgtcttttctctccttcgctccat |
355 |
Q |
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| T |
77283 |
tctctccttctccccatccttttttctctctttcgctccat |
77323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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