View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14318_high_5 (Length: 541)
Name: NF14318_high_5
Description: NF14318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14318_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 295
Target Start/End: Original strand, 45254568 - 45254839
Alignment:
| Q |
22 |
tgggacagccatattctcttgatattcctctttctgcagcnnnnnnnnn--gaacaacaaatctttcagtcaagtaaagtcaaacatgcagatttatata |
119 |
Q |
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| T |
45254568 |
tgggacagccatattctcttgatattcctctttctgcagcaaaaaaaaaaagaacaacaaatctttcagtgaagtaaagtcaaacatgcagatttatata |
45254667 |
T |
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| Q |
120 |
tnnnnnnnnnnnntgtactatttctaagattatgatgaatgaacaacatgcatgctaaaataaattgagtagctcgattagaaatagtaataagaagatg |
219 |
Q |
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| T |
45254668 |
----aaaaaaaaatgtactatttctaagattatgatgaatgaacaacatgcatgctaaaataaattgagtagctcgattagaaatagtaataagaagatg |
45254763 |
T |
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| Q |
220 |
aaaattggtgaattgagttgagaatcatattgacatgtaacaaatctgaggtagaacattaccaaccgtatcaatc |
295 |
Q |
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| T |
45254764 |
aaaattggtgaattgagttgagaatcatattgacatgtaacaaatctgaggtagaacattaccaaccgtatcaatc |
45254839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 368 - 523
Target Start/End: Original strand, 45254907 - 45255062
Alignment:
| Q |
368 |
ttgcgtaccaaagatgtagggtcagagaatagatattaattaaccaaacaaaaactgttaataaaaataagtgaactctctcttgttttgtcttttgttg |
467 |
Q |
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| T |
45254907 |
ttgcgtaccaaagatgtagggtcagagaatagatattaattaaccaaacaaaaactgttgataaaaataagtgaactctctcttgttttgtcttttgttg |
45255006 |
T |
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| Q |
468 |
tttgtttgggattctgagtgtaactgaagttgtacttccactattatatactagta |
523 |
Q |
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| T |
45255007 |
tttgtttgggattctgagtgtaactgaagttgtacttccactcttatatactagta |
45255062 |
T |
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