View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14318_high_6 (Length: 401)
Name: NF14318_high_6
Description: NF14318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14318_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 391
Target Start/End: Original strand, 14208520 - 14208891
Alignment:
| Q |
20 |
atatgttattaccttaattgatccatctgaatatccactgaacaacagtcccttgtagtatatgagggagcaaactgatgtgctaaagttcagacctgcc |
119 |
Q |
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| T |
14208520 |
atatgttattaccttaattgatccatctgaatatccactgaacaacagtcccttgtagtatatgagggagcaaactgatgtgctaaagttccgacctgcc |
14208619 |
T |
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| Q |
120 |
tcaaggatttgtgtatgaacacaagaaatacgctgctcttaccaccatgatgattaaggtgatgcnnnnnnntaaattagttagtgcttactgcaattta |
219 |
Q |
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| T |
14208620 |
tcaaggatttgtgtatgaacacaagaaatacgctgctcttaccaccatgatgattaaggtgatgcaaaaaaataaattagttagtgcttactgcaattta |
14208719 |
T |
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| Q |
220 |
attactgtttatactaaagttgcaatatggctcaaggatttgatgaatcatgctaattatgagtaatttactaaagttctttaacgtagataatgttttt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14208720 |
attactgtttatactaaagttgcaatatggctcaaggatttgatgaatcatgctaattatgagtaatttactaaagttctttaacttagataatgttttt |
14208819 |
T |
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| Q |
320 |
ccagtgttacaagttggtacgtaaatgagtacttactgatgtgtttggaagtaagaaatcagctaccctatg |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14208820 |
ccagtgttacaagttggtacgtaaatgagtacttactgatgtgtttggaagtaagaaatcagctaccctatg |
14208891 |
T |
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