View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14318_low_1 (Length: 986)
Name: NF14318_low_1
Description: NF14318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14318_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-123; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 662 - 952
Target Start/End: Complemental strand, 3696112 - 3695821
Alignment:
| Q |
662 |
atagtgtgaaaaacatattctcactgctagtagtgtcatgtatgaaatttgtagtattaaaatgtcccactgatgtcatattttatgttaattccatccg |
761 |
Q |
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|||||||||| |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
3696112 |
atagtgtgaacaacaaattctctcagctagtagtgtcatgtatgaaatttgtagtattaaaatgtcccactgatgtcatattttat--tgattccatccg |
3696015 |
T |
|
| Q |
762 |
caaaacgataaaattctttgattccttgcttttggtgaatattgaatagaataagttgtttagtctttttggtccaaagtaaagaagttctctttgtttc |
861 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3696014 |
caaaaagataaaattctttgattccttgcttttggtgaatattgaatagaataagttgtttagtctttttggtccaaagtaaagaagttctttttgtttc |
3695915 |
T |
|
| Q |
862 |
ttgttaccaggcttaaattaaatacaaggaaaataagagaattggcagca---cacagcagcattcatggcagaagcagaccggtctcaactcc |
952 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| |||||| |
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| T |
3695914 |
ttgttaccaggcttaaattaaatacaaggaaaataagagaattggcagcatacaacagcagcattcatagcagaagcagactggtctaaactcc |
3695821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 651 - 852
Target Start/End: Complemental strand, 3684849 - 3684648
Alignment:
| Q |
651 |
gtgcatgaactatagtgtgaaaaacatattctcactgctagtagtgtcatgtatgaaatttgtagtattaaaatgtcccactgatgtcatattttatgtt |
750 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||| ||||||| |||| ||||||||| |
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| T |
3684849 |
gtgcatgaactatagtgtgaaaaacatattctcactgctagtagtgtcatgtgtgaattttgtagtgttaaaatgtctcactgatatcatgttttatgtt |
3684750 |
T |
|
| Q |
751 |
aattccatccgcaaaacgataaaattctttgattccttgcttttggtgaatattgaatagaataagttgtttagtctttttggtccaaagtaaagaagtt |
850 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
3684749 |
gattccatccgcaaaaagataaaattctttgattccttgcttttggtgaatattgaatagaataagttgtttagtatttttggtgcaaagtaaagaagtt |
3684650 |
T |
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| Q |
851 |
ct |
852 |
Q |
| |
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|| |
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| T |
3684649 |
ct |
3684648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 846 - 977
Target Start/End: Complemental strand, 3684614 - 3684483
Alignment:
| Q |
846 |
aagttctctttgtttcttgttaccaggcttaaattaaatacaaggaaaataagagaattggcagcacacagcagcattcatggcagaagcagaccggtct |
945 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3684614 |
aagttctttttgtttcttgttaccaggcttaaattaaaaacaaggaaaagaagagaattggcagcacacagcagcattcatggcagaagcagaccggtct |
3684515 |
T |
|
| Q |
946 |
caactccatggacttcaccacgggagaataat |
977 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3684514 |
caactccatggacttcaccacgggagaataat |
3684483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 3685443 - 3685304
Alignment:
| Q |
22 |
aagtcccacattgaaggttcaatgaagcattacaacacatggtgcatatnnnnnnngctgcgaacttgttgtaaggcataaatctatgttctccattgaa |
121 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| |||| || |||||||||||||||| |
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| T |
3685443 |
aagtcccacatcgaaggttcaatgaagcattacaacacatggtgcatataaaacgagctacgagcttgttgtaagtcatatatttatgttctccattgaa |
3685344 |
T |
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| Q |
122 |
gnnnnnnnntggtatacgatagatttactttatgtaactc |
161 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3685343 |
aaataaaaatggtatacgatagatttactttatgtaactc |
3685304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 3678982 - 3678934
Alignment:
| Q |
22 |
aagtcccacattgaaggttcaatgaagcattacaacacatggtgcatat |
70 |
Q |
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||||||||||| ||||||||| |||||||||||| |||||||||||||| |
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| T |
3678982 |
aagtcccacatcgaaggttcagtgaagcattacagcacatggtgcatat |
3678934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 3694911 - 3694863
Alignment:
| Q |
22 |
aagtcccacattgaaggttcaatgaagcattacaacacatggtgcatat |
70 |
Q |
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|
||||||||||| |||||||||||||||||| |||||||||| ||||||| |
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| T |
3694911 |
aagtcccacatcgaaggttcaatgaagcatcacaacacatgttgcatat |
3694863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 3654288 - 3654333
Alignment:
| Q |
25 |
tcccacattgaaggttcaatgaagcattacaacacatggtgcatat |
70 |
Q |
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|||||||| ||||||||| |||||||| |||||||||||||||||| |
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| T |
3654288 |
tcccacatcgaaggttcattgaagcatcacaacacatggtgcatat |
3654333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 3693116 - 3693071
Alignment:
| Q |
25 |
tcccacattgaaggttcaatgaagcattacaacacatggtgcatat |
70 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
3693116 |
tcccacatcaaaggttcaatgaagcatcacaacacatggtgcatat |
3693071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 3674788 - 3674740
Alignment:
| Q |
22 |
aagtcccacattgaaggttcaatgaagcattacaacacatggtgcatat |
70 |
Q |
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||||||||||| ||||||| ||| |||||| |||||||||||||||||| |
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| T |
3674788 |
aagtcccacatcgaaggttgaataaagcatcacaacacatggtgcatat |
3674740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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