View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14318_low_10 (Length: 363)
Name: NF14318_low_10
Description: NF14318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14318_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 32745506 - 32745862
Alignment:
| Q |
1 |
ttggtacatatggtctaccatattagtgtaagacatagatctatcaccatctaaaaattttggtccatcatggtccatggtggaacatatggctatagtg |
100 |
Q |
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| T |
32745506 |
ttggtacatatggtctaccatattagtgtaagacatagatctatcaccatctaaaaaatttggtccatcatggtccatggtggaacatatggctatagtg |
32745605 |
T |
|
| Q |
101 |
gtccatggaagaagccacctcgtctaagaaaatcaagggaattttcggaaaaagaggggcacgcgacaaaggaaagaatttcacaaacttttaataatga |
200 |
Q |
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| T |
32745606 |
gtctatggaagaagccacctcgtctaagaaaatcaagggaattttcggaaaaagaggggcacgcgacaaaggaaagaatttcacaaacttttaataatga |
32745705 |
T |
|
| Q |
201 |
gattttcaatgatgttaagtggttggatttgaagattcttagctacatttattccattcttcagttcgtcaccaactttagctccaagttctgattgagt |
300 |
Q |
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| T |
32745706 |
gattttcaatgatgttaagtggttagatttgaagattcttagctacatttattccattcttcagttcgtcaccaactttagctccaagttctgattgagt |
32745805 |
T |
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| Q |
301 |
cctccaaatacaacatgacaccacttttgtagtacaaaagctcattattttcttcga |
357 |
Q |
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| T |
32745806 |
cctccaaatacaacatgacaccacttttgtagtacaaaagctcattattttcttcga |
32745862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 34871219 - 34871283
Alignment:
| Q |
15 |
ctaccatattagtgtaagacatagatctatcaccatctaaaaattttggtccatcatggtccatgg |
80 |
Q |
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| T |
34871219 |
ctaccatattactataagacatagatctatcaccatccaaaaaattt-gtccatcatggtccatgg |
34871283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 31094262 - 31094332
Alignment:
| Q |
8 |
atatggtctaccatattagtgtaagacatagatctatcaccatctaaaaattttggtccatcatggtccat |
78 |
Q |
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| T |
31094262 |
atatgatccaccatattattgtaagacatagatctattaccatacaaaatttcttgtcaatcatggtccat |
31094332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 31142493 - 31142420
Alignment:
| Q |
5 |
tacatatggtctaccatattagtgtaagacatagatctatcaccatctaaaaattttggtccatcatggtccat |
78 |
Q |
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| T |
31142493 |
tacatatgatccaccatattattgtaagacataaatctattaccatacaaaatttcttgtcaatcatggtccat |
31142420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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