View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14318_low_11 (Length: 360)

Name: NF14318_low_11
Description: NF14318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14318_low_11
NF14318_low_11
[»] chr8 (3 HSPs)
chr8 (190-315)||(44951209-44951334)
chr8 (110-186)||(45342045-45342121)
chr8 (327-360)||(44951374-44951407)
[»] scaffold0250 (2 HSPs)
scaffold0250 (190-265)||(4251-4326)
scaffold0250 (145-189)||(4391-4435)
[»] chr2 (8 HSPs)
chr2 (110-189)||(44623997-44624076)
chr2 (195-285)||(39473637-39473727)
chr2 (198-270)||(39414971-39415043)
chr2 (200-270)||(39415057-39415127)
chr2 (194-243)||(39215399-39215448)
chr2 (197-272)||(39389346-39389421)
chr2 (138-189)||(44614806-44614857)
chr2 (195-259)||(39422018-39422082)
[»] chr5 (1 HSPs)
chr5 (198-244)||(33560801-33560847)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 190 - 315
Target Start/End: Original strand, 44951209 - 44951334
Alignment:
Q  190 tggatttaaattcctcctcttttgactgaaactccttctcttgttctttgaatttattttctcttgattcaaactccttcattcggatctcgaaatctgc 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  44951209 tggatttaaattcctcctcttttgactgaaactccttctcttgttctttgaatttattttctcttgattcaaactccttcattcggatctcgaaatgtgc 44951308  T
Q  290 tttttcagattcaaactcctttactc 315  Q
    ||||||||||||||||||||||||||    
T  44951309 tttttcagattcaaactcctttactc 44951334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 45342121 - 45342045
Alignment:
Q  110 tccatcaaaataattcagctttgactcaagatccttgattttcatttcaaactgattctcttttaactcgagtactt 186  Q
    |||||| |||| |||||||||||||||||| |||||||||| || ||||||||||||||||||||||| ||||||||    
T  45342121 tccatccaaattattcagctttgactcaaggtccttgatttgcacttcaaactgattctcttttaactggagtactt 45342045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 44951374 - 44951407
Alignment:
Q  327 cttgggtctccttattttcaagctcttcgcagca 360  Q
    ||||||||||||||||||||||||||||||||||    
T  44951374 cttgggtctccttattttcaagctcttcgcagca 44951407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 190 - 265
Target Start/End: Complemental strand, 4326 - 4251
Alignment:
Q  190 tggatttaaattcctcctcttttgactgaaactccttctcttgttctttgaatttattttctcttgattcaaactc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||    
T  4326 tggatttaaattcctcctcttttgactgaaactccttctcttgtcctttgaatatcttttctcttgattcaaactc 4251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 4435 - 4391
Alignment:
Q  145 tgattttcatttcaaactgattctcttttaactcgagtactttga 189  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  4435 tgattttcatttcaaactgattctcttttaactggagtactttga 4391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 44624076 - 44623997
Alignment:
Q  110 tccatcaaaataattcagctttgactcaagatccttgattttcatttcaaactgattctcttttaactcgagtactttga 189  Q
    |||| |||||| |||||||||||||| ||||||||||||||  | ||||| ||||||||||||||| |||||| ||||||    
T  44624076 tccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaattcgagtgctttga 44623997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 39473637 - 39473727
Alignment:
Q  195 ttaaattcctcctcttttgactgaaactccttctcttgttctttgaatttattttctcttgattcaaactccttcattcggatctcgaaat 285  Q
    ||||||||||||||||||||||| ||||||||| ||||| | || ||||| |||||| ||||||| | |||||||| | || |||||||||    
T  39473637 ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaat 39473727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 39414971 - 39415043
Alignment:
Q  198 aattcctcctcttttgactgaaactccttctcttgttctttgaatttattttctcttgattcaaactccttca 270  Q
    |||||| |||||||||| || |||||||||  ||||||| ||||||| |||||| ||||||||||||||||||    
T  39414971 aattccccctcttttgagtggaactccttcatttgttctctgaatttcttttcttttgattcaaactccttca 39415043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 270
Target Start/End: Original strand, 39415057 - 39415127
Alignment:
Q  200 ttcctcctcttttgactgaaactccttctcttgttctttgaatttattttctcttgattcaaactccttca 270  Q
    |||||||||||||||||| ||||| |||  | |||||||||||| ||||||| ||||||||| ||||||||    
T  39415057 ttcctcctcttttgactggaactctttcattcgttctttgaattgattttcttttgattcaagctccttca 39415127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 39215448 - 39215399
Alignment:
Q  194 tttaaattcctcctcttttgactgaaactccttctcttgttctttgaatt 243  Q
    |||||||||||||| ||||||||| |||||||||| |||||||| |||||    
T  39215448 tttaaattcctcctgttttgactggaactccttcttttgttcttcgaatt 39215399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 39389346 - 39389421
Alignment:
Q  197 aaattcctcctcttttgactgaaactccttctcttgttctttgaatttattttctcttgattcaaactccttcatt 272  Q
    |||||||||||||||||| |||||||||||| ||| | ||| |||||| |  ||| |||| |||| ||||||||||    
T  39389346 aaattcctcctcttttgattgaaactccttcacttttccttcgaatttctcctcttttgactcaagctccttcatt 39389421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 44614857 - 44614806
Alignment:
Q  138 agatccttgattttcatttcaaactgattctcttttaactcgagtactttga 189  Q
    |||||||||||||  | ||||| |||||||||||||||||||||| ||||||    
T  44614857 agatccttgatttgtacttcaatctgattctcttttaactcgagtgctttga 44614806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 39422018 - 39422082
Alignment:
Q  195 ttaaattcctcctcttttgactgaaactccttctcttgttctttgaatttattttctcttgattc 259  Q
    ||||||||||||||||||||| | |||||||||  |||| | | |||||| |||||| |||||||    
T  39422018 ttaaattcctcctcttttgacaggaactccttcatttgtccatcgaatttcttttctattgattc 39422082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 33560847 - 33560801
Alignment:
Q  198 aattcctcctcttttgactgaaactccttctcttgttctttgaattt 244  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||||||    
T  33560847 aattcctcctcttttgattgaaactccttcacttgtcctttgaattt 33560801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University