View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14318_low_12 (Length: 336)
Name: NF14318_low_12
Description: NF14318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14318_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 9 - 320
Target Start/End: Original strand, 32998735 - 32999046
Alignment:
| Q |
9 |
agaatatgaattggaatctaaatgtaacctttggagagaaacagtgcagttgttcaaaccttcaagatcaccactaaactgatttaaagataaatcaagt |
108 |
Q |
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| T |
32998735 |
agaaaatgaattggaatctaaatgtaacctttggagagaaacagtgcagttgttcaaaccttcaagatcaccactaaactgatttaaagataaatcaagt |
32998834 |
T |
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| Q |
109 |
gtgtgaagatctcttgaagaattgcaaatttgagaactgaatccaccagagaatgaattgttactcacattgagtgcaagtagatgaggaaattcaccaa |
208 |
Q |
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| T |
32998835 |
gtgtgaagatctcttgaagaattgcaaatttgagaactgaatccaccagagaatgaattgttactcacattgagtgcaagtagatgaggaaattcaccaa |
32998934 |
T |
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| Q |
209 |
ggtggaaaactttatcagaaaatgaattgcttgaaatattcaacacttcaatggacttcaaaccagaaagtgattcattcacacctcctaacaacatgtt |
308 |
Q |
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| T |
32998935 |
ggtggaaaactttatcagaaaatgaattgcttgaaatattcaacacttcaatggacttcaaaccagaaagtgattcattcacacctcctaacaacatgtt |
32999034 |
T |
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| Q |
309 |
atagctcaaatc |
320 |
Q |
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| T |
32999035 |
atagctcaaatc |
32999046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 61 - 320
Target Start/End: Original strand, 52248425 - 52248683
Alignment:
| Q |
61 |
ttcaaaccttcaagatcaccactaaactgatttaaagataaatcaagtgtgtgaagatctcttgaagaattgcaaatttgagaactgaatccaccagaga |
160 |
Q |
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| T |
52248425 |
ttcaaaccttcaaggtcaccactaaaatgatttaaa-ataaatcaagtgtgtgaagaaccttggaagaattgcaaatttgagaactgaatccaccagtga |
52248523 |
T |
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| Q |
161 |
atgaattgttactcacattgagtgcaagtagatgaggaaattcaccaaggtggaaaactttatcagaaaatgaattgcttgaaatattcaacacttcaat |
260 |
Q |
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| T |
52248524 |
atgaattgttactcacactgagagcaagtagacgtggaaattcaccaaggtggaaaaactcaccaggaaacgagttactttaaatattcaacacttcaat |
52248623 |
T |
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| Q |
261 |
ggacttcaaaccagaaagtgattcattcacacctcctaacaacatgttatagctcaaatc |
320 |
Q |
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| T |
52248624 |
gagtttcaaaccaaaaagtgtctcagaaacaggtcctgacaacatgttatagctcaaatc |
52248683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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