View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14318_low_2 (Length: 788)
Name: NF14318_low_2
Description: NF14318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14318_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 311 - 780
Target Start/End: Original strand, 9752163 - 9752631
Alignment:
| Q |
311 |
gagacttgttctttaatttgtgagacacccgcttgaatgatggcttatcgaaactttgtggttgatctttaactggttgatctttaatcggttccttctc |
410 |
Q |
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| T |
9752163 |
gagacttgttctttaatttgtgagacacctgcttgaatgatggcttatcgaaactttgtggttgatctttaactggttgatctttaatcggttccttctc |
9752262 |
T |
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| Q |
411 |
taaattctctagcaacctggcttcagcttcttcattctcaacattgttacccccaagacttcttcaaaaattctaaattcctcctcactctatcttatga |
510 |
Q |
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| T |
9752263 |
gaaattctctagcaacctggcttcagcttcttcattctcaacattgttacccccaagacttcttcaaaaattctgaattcctcctgactttatcttccga |
9752362 |
T |
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| Q |
511 |
ggtctctaattgaacatcctcttcctcatcaacaatattattcacatctccaatttgtgttgcatccacaaatttagtgttttgagaggaagtgtcttcc |
610 |
Q |
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| T |
9752363 |
ggtctcctgttgaacttcctcttcctcaccagcaatattattcaaatctccaatttgtgttgcatccacaaatttagtgttttgagaggaagtgtcttct |
9752462 |
T |
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| Q |
611 |
acattgtgttgttgccctaaatcatttccactatcctccacgtcttgtacctctaaagcactaaacctgttaaggttctccacttactctatttcttgca |
710 |
Q |
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| T |
9752463 |
acattgtgttgttgccctaaatcatttccactatcctccacgtcttgtacctcgaacgcactaaacctgttaaggttctccactaactctatttcttgca |
9752562 |
T |
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| Q |
711 |
aaataggatattttacctttcctctaagcagaatttgcttctcttcagtgcctcatctatctccctttgc |
780 |
Q |
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| T |
9752563 |
aaataggata-ttgacctttcctctaagaagaatttgcttctcttcagtgcctcatctatctccctttgc |
9752631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 9751853 - 9752124
Alignment:
| Q |
1 |
ttggtcatcaataagtattatcttagggttaaggtgagttaaacaaaatcttcttaaaaacaatttgaagttcaatctagcaaacatgtttcttgttaaa |
100 |
Q |
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| T |
9751853 |
ttggtcatcaataagtattatcttagggttaaggtgagttaaacaaaatcttcttaaaaacaatttgaagttcaatctagcaaacatgtttcttgttaaa |
9751952 |
T |
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| Q |
101 |
tcttctattttcatctaaggttcagcaatgaggacaataccaggtttatcatttagaataagattcttgagtgccaatcttttagggtgattagctaagc |
200 |
Q |
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| T |
9751953 |
tcttctattttcatctaaggttcagcaatgaggacaataccaggtttatcatttagaataagattcttgagtgccaatcttttagggtgattagctaagc |
9752052 |
T |
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| Q |
201 |
ctatcaagttctagtacattcacttcatctgaaaggattggggtttacaccctttgatatggtagcataaag |
272 |
Q |
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| T |
9752053 |
ctatcaagttctagtacatgcacttcatctgaaaggattggggtttacaacctttgatatggtagcataaag |
9752124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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