View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14318_low_21 (Length: 250)
Name: NF14318_low_21
Description: NF14318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14318_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 48363450 - 48363692
Alignment:
| Q |
1 |
aatgtgggtgaactagagagccatgaccaagatcatgatcatgggttgaaagtgtttgagtcttatgaaaaagagcttgcttcaaagtcaacacctttaa |
100 |
Q |
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| T |
48363450 |
aatgtgggtgaactagagagccatgaccaagatcatgatcatgggttgaaagtgtttgaatcttatgaaaaagagcttgcttcaaagtcaacacctttaa |
48363549 |
T |
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| Q |
101 |
actgtgcttctcctgacataaggtttaccccaagcccaaatacaccccctcaagttcctgctacaaatgaaaaccttaccacgagaaaaactctccgaag |
200 |
Q |
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| T |
48363550 |
actgtgcttctcctgacataaggttcaccccaagcccaaatacaccccctcaagttcctgctacaaatgaaaaccttaccacgagaaaaactctccgaag |
48363649 |
T |
|
| Q |
201 |
atctgtgtattctaagcccaaatcaaggtttgtagaataatct |
243 |
Q |
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| T |
48363650 |
atctgtgtattctaaacccaaatcaaggtttgtagaacaatct |
48363692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 83 - 232
Target Start/End: Complemental strand, 48399050 - 48398901
Alignment:
| Q |
83 |
caaagtcaacacctttaaactgtgcttctcctgacataaggtttaccccaagcccaaatacaccccctcaagttcctgctacaaatgaaaaccttaccac |
182 |
Q |
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|||||||| ||||||||||||||||||| ||||| |||||||| | ||| |||||||||| ||||| | ||||||||||||||||||| ||||||| | |
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| T |
48399050 |
caaagtcaccacctttaaactgtgcttcccctgaaataaggttcatccctagcccaaataagcccccaaaggttcctgctacaaatgaaagccttacccc |
48398951 |
T |
|
| Q |
183 |
gagaaaaactctccgaagatctgtgtattctaagcccaaatcaaggtttg |
232 |
Q |
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| T |
48398950 |
aagaaaaactcttgttagatcagtgttctctaagcccaaatcaagatttg |
48398901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 232
Target Start/End: Original strand, 48383076 - 48383225
Alignment:
| Q |
83 |
caaagtcaacacctttaaactgtgcttctcctgacataaggtttaccccaagcccaaatacaccccctcaagttcctgctacaaatgaaaaccttaccac |
182 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||| |||||||| | ||| |||||||||| |||||| || ||||||| ||| || ||| |||||||| |
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| T |
48383076 |
caaagtcaccacctttaaactgtgcttcccctgaaataaggttcatccctagcccaaataaacccccaaaatctcctgctgcaactgcaaaacttaccac |
48383175 |
T |
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| Q |
183 |
gagaaaaactctccgaagatctgtgtattctaagcccaaatcaaggtttg |
232 |
Q |
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|||||| || | |||||| ||||||||||||||||||||||| |||| |
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| T |
48383176 |
aagaaaatcttttaaaagatcagtgtattctaagcccaaatcaagatttg |
48383225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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