View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14318_low_29 (Length: 201)
Name: NF14318_low_29
Description: NF14318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14318_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 17300110 - 17300280
Alignment:
| Q |
12 |
aagaatatctcagttcatacttgcaattgtggtggtgttcaactactaatcaattatcttcacactgattatgttcttcatttcttaatgggattgaatc |
111 |
Q |
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| T |
17300110 |
aagaatatcacagttcatacttgcaattgtggtgctgttcaactactaatcaattatcttcacactgattatgttcttcatttcttaatgggattgaatc |
17300209 |
T |
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| Q |
112 |
aaagctttagtcatgttacaggccgaattttacttcaagaattgtattccctctatgaatcgagttctagc |
182 |
Q |
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| T |
17300210 |
aaagctttagtcatgttacaggccgaattttacttcaagaattgtattccctctatgaatcgagttctagc |
17300280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 17293573 - 17293693
Alignment:
| Q |
25 |
ttcatacttgcaattgtggtggtgttcaactactaatcaattatcttcacactgattatgttcttcatttcttaatgggattgaatcaaagctttagtca |
124 |
Q |
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| T |
17293573 |
ttcatacttgcaattgtggtggtattcaactaccaatcaattatcttcacactaattatgttctttatttcttaacgggattgaatgaaagcattagtca |
17293672 |
T |
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| Q |
125 |
tgttacaggccgaattttact |
145 |
Q |
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| T |
17293673 |
tgttacaggtcgaattttact |
17293693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 30894790 - 30894700
Alignment:
| Q |
91 |
atttcttaatgggattgaatcaaagctttagtcatgttacaggccgaattttacttcaagaattgtattccctctatgaatcgagttctagc |
182 |
Q |
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| T |
30894790 |
atttgttaattggattgaatgaaagctttagtcatgtttgaggtcaaattttacttcaa-catcccactccctctatgaatcgtgttctagc |
30894700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 30894825 - 30894788
Alignment:
| Q |
29 |
tacttgcaattgtggtggtgttcaactactaatcaatt |
66 |
Q |
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| T |
30894825 |
tactttcaattgtggtggtgttcaaccactaatcaatt |
30894788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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