View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14318_low_6 (Length: 545)
Name: NF14318_low_6
Description: NF14318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14318_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 17 - 535
Target Start/End: Original strand, 7415318 - 7415836
Alignment:
| Q |
17 |
caccaaatggtaacaactcaaaatcatgtccttttacatctatatctttaccaagaaacctctcaggcataaattcatatggattctcccaaacctcaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7415318 |
caccaaatggtaacaactcaaaatcatgtccttttacatctatatctttaccaagaaacctctcaggcataaattcatatggattctcccaaacctcaga |
7415417 |
T |
|
| Q |
117 |
atctcttgcaattgtccaagtattgacaagaactatagtccctttgggaatatcgtaaccatcaactttgcaatcctctctagcttctcgtggcactaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7415418 |
atctcttgcaattgtccaagtattgacaagaactatagtccctttgggaatatcgtaaccatcaactttgcaatcctctctagcttctcgtggcactaaa |
7415517 |
T |
|
| Q |
217 |
aatggtgccacgggatgtagcctcattgtttctttagcaattgcataaacataaggtaaattcgcaatgtctttctcttcaacccatctatcttttccta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7415518 |
aatggtgccacgggatgtagcctcattgtttctttagcaattgcgtaaacataaggtaaattcgcaatgtctttctcttcaacccatctatcttttccta |
7415617 |
T |
|
| Q |
317 |
tcactctatctagctcctcggttgctttcttgaagatctctggttttctaaccagctcggagattgcccattctactgttactgctgagctctccgtccc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7415618 |
tcactctatctagctcctcggttgctttcttgaagatctctggttttctaaccagctcggagattgcccattctactgttactgcggagctctccgtccc |
7415717 |
T |
|
| Q |
417 |
tccggcaattaagtcctgagg-nnnnnnntacataacaaataagttagcacatgaaaaaatttaaatcgttaaaatgtgtcagggtcggaccaacccatt |
515 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7415718 |
tccggcaattaagtcctgaggaaaaaaaatacataacaaataagttagcacatgaaaaaatttaaatcgttaaaatgtgtca-ggtcggaccaacccatt |
7415816 |
T |
|
| Q |
516 |
taacaagagcaaaatttaga |
535 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
7415817 |
taacaagagcaaaatttaga |
7415836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 7422978 - 7423360
Alignment:
| Q |
18 |
accaaatggtaacaactcaaaatcatgtccttttacatctatatctttaccaagaaacctctcaggcataaattcatatggattctcccaaacctcagaa |
117 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||| ||||||| |||||||||||| ||||| ||||||||||| |||||||| | || | |
|
|
| T |
7422978 |
accaaatggcaacaactcataatcatgtccttttacatctatattattaccaataaacctctcaggtataaactcatatggattgtcccaaacattagga |
7423077 |
T |
|
| Q |
118 |
tctcttgcaattgtccaagtattgacaagaactatagtccctttgggaatatcgtaaccatcaactttgcaatcctctctagcttctcgtggcactaaaa |
217 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || ||||||||| || ||||| ||||||||||| ||||||||||| |||||||||| ||||||||| | |
|
|
| T |
7423078 |
tctcttccaattgtccaagtattgacaagaattagagtcccttttgggatatcataaccatcaacattgcaatcctcactagcttctcttggcactaaca |
7423177 |
T |
|
| Q |
218 |
atggtgccacgggatgtagcctcattgtttctttagcaattgcataaacataaggtaaattcgcaatgtctttctcttcaacccatctatcttttcctat |
317 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7423178 |
atggtgctgcaggatgaagcctcattgtttctttagcaattgcaaaaacataaggtaaattgacaatgtctttctcttcaacccatctatctcttcctat |
7423277 |
T |
|
| Q |
318 |
cactctatctagctcctcggttgctttcttgaagatctctggttttctaaccagctcggagattgcccattctactgttactg |
400 |
Q |
| |
|
||| | ||||| ||||| || ||| |||||| |||||||| ||| | || ||||||||||||||||||||||||||||||| |
|
|
| T |
7423278 |
tactttgtctagttcctccgtagctctcttgataatctctggctttttcacaagctcggagattgcccattctactgttactg |
7423360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 72 - 391
Target Start/End: Original strand, 7429441 - 7429760
Alignment:
| Q |
72 |
aaacctctcaggcataaattcatatggattctcccaaacctcagaatctcttgcaattgtccaagtattgacaagaactatagtccctttgggaatatcg |
171 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| ||||||||||| || ||||| |
|
|
| T |
7429441 |
aaacctctctggtataaattcatatggattatcccaactatcagaatctcttccaattgtccaagtattgacaagaatcatagtcccttttggtatatca |
7429540 |
T |
|
| Q |
172 |
taaccatcaactttgcaatcctctctagcttctcgtggcactaaaaatggtgccacgggatgtagcctcattgtttctttagcaattgcataaacataag |
271 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||||| ||||||||| | ||||| ||| ||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7429541 |
taaccatcaacattgcaattctcagtagcttctcttggcactaacattggtgtcacaggatgaagcctcattgtttctttagcaattgcaaaaacataag |
7429640 |
T |
|
| Q |
272 |
gtaaattcgcaatgtctttctcttcaacccatctatcttttcctatcactctatctagctcctcggttgctttcttgaagatctctggttttctaaccag |
371 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||| || ||| |||||| |||||||| || | || || |
|
|
| T |
7429641 |
gtaaattgacaatgtctttctcttcaacccatctatctctccctattactctatctagttcctctgtagctctcttgataatctctggccttttcacaag |
7429740 |
T |
|
| Q |
372 |
ctcggagattgcccattcta |
391 |
Q |
| |
|
||| || ||||||||||||| |
|
|
| T |
7429741 |
ctcagaaattgcccattcta |
7429760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University