View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14318_low_9 (Length: 396)

Name: NF14318_low_9
Description: NF14318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14318_low_9
NF14318_low_9
[»] chr2 (2 HSPs)
chr2 (35-385)||(10585543-10585898)
chr2 (122-385)||(5381179-5381452)
[»] chr4 (2 HSPs)
chr4 (35-385)||(46722320-46722675)
chr4 (160-385)||(13769280-13769517)
[»] chr3 (1 HSPs)
chr3 (35-385)||(30343106-30343461)
[»] chr1 (1 HSPs)
chr1 (35-379)||(48777159-48777504)
[»] chr7 (2 HSPs)
chr7 (35-385)||(306316-306676)
chr7 (35-385)||(2827441-2827801)
[»] chr5 (1 HSPs)
chr5 (68-385)||(39684677-39685002)
[»] chr8 (1 HSPs)
chr8 (118-381)||(2812033-2812298)


Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 35 - 385
Target Start/End: Complemental strand, 10585898 - 10585543
Alignment:
Q  35 gagaatactctaaccaataaggaaataattgaaaccaagaagcttgaaaacgacgaggatgatcatcatttgataaaggatacgttctaagaataggttg 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10585898 gagaatactctaaccaataaggaaataattgaaaccaagaagcttgaaaacgacgaggatgatcatcatttgataaaggatatgttctaagaataggttg 10585799  T
Q  135 gcatggcccatgtttaagatagg----acgaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctgaatctacttcattttga 230  Q
    |||||||||||||||||||||||    ||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| |||||||||| |||||    
T  10585798 gcatggcccatgtttaagataggcacaacgaatttcatctctttgatttataggaaagtcccaaatcatcggttgcaattctggatctacttcaatttga 10585699  T
Q  231 gaacgactcatttcttcatgacaaagtctttggcgttttggcttagattgttcttgttcttgaagtgaaatattgagattggatgcttcaattggagagg 330  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  10585698 gaacgactcatttcttcatgacaaagtctttggcgttttggctcagattgttcttgttcttgaggtgaaataatgagattggatgcttcaattggagagg 10585599  T
Q  331 aactacttggagcatttggatcgattc-ttttaaagaagttgtcaatagttttcat 385  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10585598 aactacttggagcatttggatcgattctttttaaagaagttgtcaatagttttcat 10585543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 122 - 385
Target Start/End: Original strand, 5381179 - 5381452
Alignment:
Q  122 taagaataggttggcatggcccatgtttaagatagg----acgaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctgaatc 217  Q
    ||||||||||||||||||||||| || |||||||||    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||    
T  5381179 taagaataggttggcatggcccacgtctaagataggcacgacgaatttcatctctttgatttagaggaaagtcccaaatcatcgatcgcaatcctggatc 5381278  T
Q  218 tacttcattttgagaacgactcatttcttcatgacaaagtctttggcgttttggcttaga------ttgttcttgttcttgaagtgaaatattgagattg 311  Q
    ||||||| ||||||||| ||||| |||||||||| ||||||||||| |||||| || |||      |||||||||||||||| |||||| || ||| |||    
T  5381279 tacttcaatttgagaacaactcaattcttcatgataaagtctttggtgttttgactcagattgtttttgttcttgttcttgaggtgaaacatcgaggttg 5381378  T
Q  312 gatgcttcaattggagaggaactacttggagcatttggatcgattcttttaaagaagttgtcaatagttttcat 385  Q
    |||||||||||||||||||||||||||| |||||||| ||| | ||||||||||||  ||||||| ||||||||    
T  5381379 gatgcttcaattggagaggaactacttgcagcatttgtatccactcttttaaagaatgtgtcaatggttttcat 5381452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 35 - 385
Target Start/End: Complemental strand, 46722675 - 46722320
Alignment:
Q  35 gagaatactctaaccaataaggaaataattgaaaccaagaagcttgaaaacgacgaggatgatcatcatttgataaaggatacgttctaagaataggttg 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  46722675 gagaatactctaaccaataaggaaataattgaaaccaagaagcttgaaaacgacgaggatgatcatcatttgataaaggatatgttctaagaataggttg 46722576  T
Q  135 gcatggcccatgtttaagatagg----acgaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctgaatctacttcattttga 230  Q
    |||||||||||||||||||||||    ||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| |||||||||| |||||    
T  46722575 gcatggcccatgtttaagataggcacaacgaatttcatctctttgatttataggaaagtcccaaatcatcggttgcaattctggatctacttcaatttga 46722476  T
Q  231 gaacgactcatttcttcatgacaaagtctttggcgttttggcttagattgttcttgttcttgaagtgaaatattgagattggatgcttcaattggagagg 330  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||    
T  46722475 gaacgactcatttcttcatgacaaagtctttggtgttttggctcagattgttcttgttcttgaggtgaaataatgagattggatgcttcaattgaagagg 46722376  T
Q  331 aactacttggagcatttggatcgattc-ttttaaagaagttgtcaatagttttcat 385  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46722375 aactacttggagcatttggatcgattctttttaaagaagttgtcaatagttttcat 46722320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 160 - 385
Target Start/End: Complemental strand, 13769517 - 13769280
Alignment:
Q  160 gaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctgaatctacttcattttgagaacgactcatttcttcatgacaaagtct 259  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| ||||| ||| ||||||||||||||||| ||||||    
T  13769517 gaatttcatctctttgatttacaggaaagtcccagatcatcggttgcaatcctggatctacttcaatttgaaaacaactcatttcttcatgacgaagtct 13769418  T
Q  260 ttggcgttttggcttagattgttcttgtt------------cttgaagtgaaatattgagattggatgcttcaattggagaggaactacttggagcattt 347  Q
    |||||||||||||| ||| | ||||||||            ||||| |||||| |||||| |||||||||||||||| |||||||||||||| |||||||    
T  13769417 ttggcgttttggctcagaattttcttgttcttgttcttgttcttgaggtgaaacattgaggttggatgcttcaattgaagaggaactacttgcagcattt 13769318  T
Q  348 ggatcgattcttttaaagaagttgtcaatagttttcat 385  Q
    | ||  | ||||||||||||  ||||||||||||||||    
T  13769317 gtattcactcttttaaagaatgtgtcaatagttttcat 13769280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 35 - 385
Target Start/End: Complemental strand, 30343461 - 30343106
Alignment:
Q  35 gagaatactctaaccaataaggaaataattgaaaccaagaagcttgaaaacgacgaggatgatcatcatttgataaaggatacgttctaagaataggttg 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30343461 gagaatactctaaccaataaggaaataattgaaaccaagaagcttgaaaacgacgaggatgatcatcatttgataaaggatatgttctaagaataggttg 30343362  T
Q  135 gcatggcccatgtttaagatagg----acgaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctgaatctacttcattttga 230  Q
    ||||| |||||||||||||||||    ||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| |||||||||| |||||    
T  30343361 gcatgacccatgtttaagataggcacaacgaatttcatctctttgatttataggaaagtcccaaatcatcggttgcaattctggatctacttcaatttga 30343262  T
Q  231 gaacgactcatttcttcatgacaaagtctttggcgttttggcttagattgttcttgttcttgaagtgaaatattgagattggatgcttcaattggagagg 330  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||    
T  30343261 gaacgactcatttcttcatgacaaagtctttggagttttggctcagattgttcttgttcttgaggtgaaataatgagattggatgcttcaattgaagagg 30343162  T
Q  331 aactacttggagcatttggatcgattc-ttttaaagaagttgtcaatagttttcat 385  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30343161 aactacttggagcatttggatcgattctttttaaagaagttgtcaatagttttcat 30343106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 35 - 379
Target Start/End: Complemental strand, 48777504 - 48777159
Alignment:
Q  35 gagaatactctaaccaataaggaaataattgaaaccaagaagcttgaaaacgacgaggatgatcatcatttgataaaggatacgttctaagaataggttg 134  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48777504 gagaatactctaatcaataaggaaataattgaaaccaagaagcttgaaaacgacgaggatgatcatcatttgataaaggatacgttctaagaataggttg 48777405  T
Q  135 gcatggcccatgtttaagatag----gacgaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctgaatctacttcattttga 230  Q
    |||||| |||||||||||||||    | ||||||| |||||||||||| | |||||||||| ||||||| |||||||||| || |||||||||| |||||    
T  48777404 gcatgggccatgtttaagataggcacggcgaattttatctctttgattgataggaaagtcctaaatcataggtcgcaatcttggatctacttcaatttga 48777305  T
Q  231 gaacgactcatttcttcatgacaaagtctttggcgttttggcttagattgttcttgttcttgaagtgaaatattgagattggatgcttcaattggagagg 330  Q
    |||| ||||||||||||||||| ||||||||||||||||||||   ||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  48777304 gaacaactcatttcttcatgacgaagtctttggcgttttggct---attgttcttgttctttaggtgaaatattgagattggatgcttcaattggagagg 48777208  T
Q  331 aactacttggagcatttggatcgattcttttaaagaagttgtcaatagt 379  Q
    ||||||||| |||||||| | | ||||||||||||||||||||||||||    
T  48777207 aactacttgcagcatttgtaacaattcttttaaagaagttgtcaatagt 48777159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 35 - 385
Target Start/End: Original strand, 306316 - 306676
Alignment:
Q  35 gagaatactctaaccaataaggaaataattgaaaccaagaagcttgaaaacgacgaggatgatcatcatttgataaaggatacgttctaagaataggttg 134  Q
    |||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  306316 gagagtactctaaccaagaaggaaataattgaaaccaagaagctttaaaacgacgaggatgatcatcatttgataaaggatacgttataagaataggttg 306415  T
Q  135 gcatggcccatgtttaagatagg----acgaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctgaatctacttcattttga 230  Q
    |||||||||| || |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  306416 gcatggcccacgtctaagataggcacgacgaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctggatctacttcaatttga 306515  T
Q  231 gaacgactcatttcttcatgacaaagtctttggcgttttggcttaga------ttgttcttgttcttgaagtgaaatattgagattggatgcttcaattg 324  Q
    |||| ||||||||||||||||| |||||||||||||||||| | |||      |||||||||||||||| |||||| |||||| ||||||||||||||||    
T  306516 gaacaactcatttcttcatgacgaagtctttggcgttttggatgagattgttcttgttcttgttcttgaggtgaaacattgaggttggatgcttcaattg 306615  T
Q  325 gagaggaactacttggagcatttggatcgattcttttaaagaagttgtcaatagttttcat 385  Q
    ||||||||| ||||| |||||||| ||| | ||||||| ||||  ||||||||||||||||    
T  306616 gagaggaaccacttgtagcatttgtatccactcttttatagaatgtgtcaatagttttcat 306676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 35 - 385
Target Start/End: Complemental strand, 2827801 - 2827441
Alignment:
Q  35 gagaatactctaaccaataaggaaataattgaaaccaagaagcttgaaaacgacgaggatgatcatcatttgataaaggatacgttctaagaataggttg 134  Q
    |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  2827801 gagagtactctaaccaagaaggaaataattgaaaccaagaagctttaaaacgacgaggatgatcatcatttgataaaggatacattataagaataggttg 2827702  T
Q  135 gcatggcccatgtttaagatagg----acgaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctgaatctacttcattttga 230  Q
    |||||||||| || |||||||||    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||    
T  2827701 gcatggcccacgtctaagataggcacgacgaatttcatctctttgatttataggaaagtcccaaatcatcggtcgcaatcctggatctacttcaatttga 2827602  T
Q  231 gaacgactcatttcttcatgacaaagtctttggcgttttggcttagattgttcttgtt------cttgaagtgaaatattgagattggatgcttcaattg 324  Q
    |||| ||||||||||||||||| ||| |||||||||||||| | ||||||||||||||      ||||| |||||| |||||| ||||||||||||||||    
T  2827601 gaacaactcatttcttcatgacgaagcctttggcgttttggatgagattgttcttgttcttgttcttgaggtgaaacattgaggttggatgcttcaattg 2827502  T
Q  325 gagaggaactacttggagcatttggatcgattcttttaaagaagttgtcaatagttttcat 385  Q
    ||||||||| ||||| |||||||| ||| | ||||||| ||||  |||||||| |||||||    
T  2827501 gagaggaaccacttgtagcatttgtatccactcttttatagaatgtgtcaataattttcat 2827441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 68 - 385
Target Start/End: Original strand, 39684677 - 39685002
Alignment:
Q  68 accaagaagcttgaaaacgacgaggatgatcatcatttgataaaggatacgttctaagaataggttggcatggcccatgtttaagatagga----cgaat 163  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||     |||||    
T  39684677 accaagaagctttaaaacaacgaggatgatcatcatttgataaaggatatgttataagaataggttggcatggcccacgtctaagataggcacggcgaat 39684776  T
Q  164 ttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctgaatctacttcattttgagaacgactcatttc----ttcatgacaaagtct 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||    |||||||| ||||||    
T  39684777 ttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctggatctacttcaatttgagaacaactcatttctttcttcatgacgaagtct 39684876  T
Q  260 ttggcgttttggcttagattgttcttgttcttgaagtgaaatattgagattggatgcttcaattggagaggaactacttggagcatttggatcgattctt 359  Q
    |||| ||||||||| ||||||||||||||||||| |||||| |||||| |||||||||| |||||||||||||||||||| |||||||| ||| | ||||    
T  39684877 ttggtgttttggctcagattgttcttgttcttgaggtgaaacattgaggttggatgctttaattggagaggaactacttgcagcatttgtatccactctt 39684976  T
Q  360 ttaaagaagttgtcaatagttttcat 385  Q
    ||||||||  ||||||||||||||||    
T  39684977 ttaaagaatgtgtcaatagttttcat 39685002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 118 - 381
Target Start/End: Complemental strand, 2812298 - 2812033
Alignment:
Q  118 gttctaagaataggttggcatggcccatgtttaagatagg----acgaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctg 213  Q
    |||||||||||| ||||||||||| | |||||||||| ||    ||||||||||||||||||||||||| ||||||||||| ||| |  |||||||||||    
T  2812298 gttctaagaatatgttggcatggctcgtgtttaagatgggcacgacgaatttcatctctttgatttacaagaaagtcccaa-tcaacaatcgcaatcctg 2812200  T
Q  214 aatctacttcattttgagaacgactcatttcttcatgacaaagtctttggcgttttggcttagattgttcttgttcttgaagtgaaatattgagattgga 313  Q
     |||| ||| | ||||||||||||| ||||||||||||  ||||||||| |||||||||| ||||||||||| || |||| |||| |||||||||| | |    
T  2812199 gatctgcttaaatttgagaacgactaatttcttcatgatgaagtctttgtcgttttggctcagattgttcttttttttgaggtgatatattgagatcgaa 2812100  T
Q  314 tgcttcaattggagaggaactacttggagcatttggatcgattcttttaaagaagttgtcaatagttt 381  Q
    ||||||||||||||||||||| |||| |||||||| |||||||| |||||||||||||||||||||||    
T  2812099 tgcttcaattggagaggaactgcttgcagcatttgtatcgattc-tttaaagaagttgtcaatagttt 2812033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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