View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14319_high_4 (Length: 329)
Name: NF14319_high_4
Description: NF14319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14319_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 45305411 - 45305724
Alignment:
| Q |
1 |
tagaaggaatgaagttacttagctagctataaacactgtgttaaaaaacacatataataaatgaaggggattgaaatggaaaagtgggagtagttgttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45305411 |
tagaaggaatgaagttacttagctagctataaacactgtgttaaaaaacacatataataaatgaaggggattgaaatggaaaagtgggagtagttgttag |
45305510 |
T |
|
| Q |
101 |
atatagaaatatttttggtagtgagtgtggttatggtaatttgaaatggagttgaagttaagaaaaaagggaaaagaagtgagtggcaatgaccaaaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45305511 |
atatagaaatatttttggtagtgagtgtggttatggtaatttgaaatggagttgaagttaagaaaaaagggaaaagaagtgagtggcaatgaccaaaata |
45305610 |
T |
|
| Q |
201 |
aaaatggcaagacctagctagctagttgaaatgaaaagggtgcatatatatggcatatataggttgattgatgctgctatgagatggtaataacaaaaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45305611 |
aaaatggcaagacctagctagctagttgaaatgaaaagggtgcatatatatggcatatataggttgattgatgctgctatgagatggtaataacaaaaac |
45305710 |
T |
|
| Q |
301 |
cataaccattgtta |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45305711 |
cataaccattgtta |
45305724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University