View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14319_low_1 (Length: 510)
Name: NF14319_low_1
Description: NF14319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14319_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 493
Target Start/End: Complemental strand, 14901322 - 14900841
Alignment:
| Q |
14 |
ttctcatcattttcaacaattggttccaagatagaacctttcttctccaaaatctccttttgatttgtacttgatgactgcagcagctttcccatttttc |
113 |
Q |
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| T |
14901322 |
ttctcatcattttcaacaattggttccaaggtagaacctttcttctccaaaatctccttttgattagtacttgatgacttcagcagctttcccatttttc |
14901223 |
T |
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| Q |
114 |
ctttataaacacaccttctttttgacacgtttgattcagtagagtttcctgattggtctatggaattttgcataacctcgtgccaaacatgtggctgttc |
213 |
Q |
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| T |
14901222 |
ctttataaacacaccttcgttttgacacatttgattcggtagagtttcctgattggtctatggaattttgcataacctcgtgtaaaacatgtggttgttc |
14901123 |
T |
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| Q |
214 |
ttcttcaacttgtttatctgattttgaagccaaatctgaagctaaagtagctgcttgcattgacatcattgcactaactgcttgtgcaatatcattatga |
313 |
Q |
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| T |
14901122 |
ttcttcaacttgtttatctgattttgaagccaaatctgaagctgaagtagctgcttgcattgacatcatcgcactaactgcttggacaatatcattatgg |
14901023 |
T |
|
| Q |
314 |
aattctaaaaaccattcaaaacatgtagcaggtgcatcaactcgagctgattttgctaaatttgaaaacatcctgaaagaaaacacc-aaaaataaagtt |
412 |
Q |
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| T |
14901022 |
aattccagaaaccgttcaaaacatgtagcaggtgcatcagctcgagctgatttggctaaattagaaaacatcctaaaagaaaaagttgaaaaatacagtt |
14900923 |
T |
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| Q |
413 |
attcagtttctagtttactttagtagctgaaacaaatatataaaagtgcaaagctagt--ccaaaaatagaattaaaaaagga |
493 |
Q |
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| T |
14900922 |
atttagttgctagtctacactagttgctgatgcaa-tatataaaagtgcaaagctagtacccaaaaatagaattgaataagga |
14900841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 11 - 488
Target Start/End: Complemental strand, 14908087 - 14907633
Alignment:
| Q |
11 |
ttattctcatcattttcaacaattggttccaagatagaacctttcttctccaaaatctccttttgatttgtacttgatgactgcagcagctttcccattt |
110 |
Q |
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| T |
14908087 |
ttattctcatcattttcaacaataggttctgagatagaacttttcttctccgaaatctccttttgatttgtacttgaaatctcc--------------tt |
14908002 |
T |
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| Q |
111 |
ttcctttataaacacaccttctttttgacacgtttgattcagtagagtttcctgattggtctatggaattttgcataacctcgtgccaaacatgtggctg |
210 |
Q |
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| T |
14908001 |
ttcctttataaacacgccttctttttgacatgtttgattcagtaaagtttcctgattggtctgtggaattttgcattacctcgtgtaaaacaagtggttg |
14907902 |
T |
|
| Q |
211 |
ttcttcttcaacttgtttatctgattttgaagccaaatctgaagctaaagtagctgcttgcattgacatcattgcactaactgcttgtgcaatatcatta |
310 |
Q |
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| T |
14907901 |
ttcttc---aacttgtttatctgattttgaagccaatactgaagctgaagtctctgcttgcattgacatcattccactaactgcttgtacagtatcagta |
14907805 |
T |
|
| Q |
311 |
tgaaattctaaaaaccattcaaaacatgtagcaggtgcatcaactcgagctgattttgctaaatttgaaaacatcctgaaagaaaacaccaaaaataaag |
410 |
Q |
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|| ||||| | ||||| ||||||||| ||| ||||||||||| ||||| |||||||||||||||| |||||||| ||||||| ||||||||||| | |
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| T |
14907804 |
tggaattccagaaaccgttcaaaacaggtatcaggtgcatcatctcgaactgattttgctaaattagaaaacat-----aagaaaaaaccaaaaataatg |
14907710 |
T |
|
| Q |
411 |
ttattcagtttctagtttactttagtagctgaaacaaatatataaaagtgcaaagctagtccaaaaatagaattaaaa |
488 |
Q |
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||| | | || ||| | ||| |||||||| ||||| ||||| ||||||| ||| |||| | |||||||||||||||| |
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| T |
14907709 |
ttaattatttgctatctaactctagtagctaaaacatatata-aaaagtgaaaatctagacaaaaaatagaattaaaa |
14907633 |
T |
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