View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14319_low_3 (Length: 368)
Name: NF14319_low_3
Description: NF14319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14319_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 25 - 352
Target Start/End: Complemental strand, 8467127 - 8466802
Alignment:
| Q |
25 |
tggaggtggacagaatgccnnnnnnnctctgtaaacaaccctttgctaagcccacatgaacaagatct--ttaagctaaattcatctgtgtgcacatata |
122 |
Q |
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| T |
8467127 |
tggaggtggacagaatgccaaaaaaactctgtaaacaaccctttgctaagcccacatgaacaagatccagttaagctaaattcatctgtgtgcacatata |
8467028 |
T |
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| Q |
123 |
tctggtagaatcatcaacaacatatgaaacaagaagcattaaggtaataagatggatgacagccaaagagcagcaggtaggtagattgatggtgccctta |
222 |
Q |
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| T |
8467027 |
tatggtagaatcatcaacaacatatgaaacaagaagcattaaggtaataagatggatgacagccaaagggcagcaggtaggtagattgatggtgccctta |
8466928 |
T |
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| Q |
223 |
tttaagatagatgggtatgtgatggagcttcattggnnnnnnnnnnnnnnnnnncacaataaataagataggaagtgaaatgatgagcaagattaattat |
322 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8466927 |
tttaagatagatgggtatgtgatggagcatcattg----tgtgtgtgtgtgtgtcacaataaataagataggaagtgaaatgatgagcaagattaattat |
8466832 |
T |
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| Q |
323 |
tcatttaataagagaagaaaacgtaggtac |
352 |
Q |
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| T |
8466831 |
tcatttattaagagaagaaaacgtaggtac |
8466802 |
T |
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