View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14319_low_6 (Length: 235)

Name: NF14319_low_6
Description: NF14319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14319_low_6
NF14319_low_6
[»] chr7 (3 HSPs)
chr7 (13-99)||(39011959-39012045)
chr7 (165-218)||(39011312-39011365)
chr7 (133-208)||(37412849-37412920)
[»] chr6 (3 HSPs)
chr6 (126-218)||(8683973-8684064)
chr6 (161-218)||(15829341-15829398)
chr6 (163-203)||(6420609-6420649)
[»] chr3 (2 HSPs)
chr3 (13-99)||(25703205-25703291)
chr3 (126-204)||(25703088-25703166)
[»] chr8 (4 HSPs)
chr8 (126-218)||(4047397-4047488)
chr8 (20-99)||(5552389-5552468)
chr8 (42-89)||(4047919-4047966)
chr8 (136-218)||(26658122-26658203)
[»] chr4 (6 HSPs)
chr4 (15-101)||(3334938-3335024)
chr4 (133-218)||(23978651-23978734)
chr4 (139-218)||(43454216-43454293)
chr4 (133-218)||(46194930-46195015)
chr4 (133-205)||(16861262-16861331)
chr4 (133-205)||(23099016-23099086)
[»] chr1 (4 HSPs)
chr1 (24-101)||(44948942-44949019)
chr1 (173-218)||(24231692-24231737)
chr1 (136-216)||(50960019-50960096)
chr1 (173-205)||(44826001-44826033)
[»] chr2 (1 HSPs)
chr2 (126-205)||(15401508-15401580)
[»] chr5 (1 HSPs)
chr5 (134-218)||(19779091-19779175)


Alignment Details
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 39012045 - 39011959
Alignment:
Q  13 agcagagaccccaaaccttatttttatccaacatttttccttcttcagatttgtcaaacaccaattttattatttctcatacatata 99  Q
    |||||| ||||||||||||||||| ||| |||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||    
T  39012045 agcagaaaccccaaaccttattttcatctaacatttttcattcttcaaatttgccaaacaccaattttattatttctcatacatata 39011959  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 39011365 - 39011312
Alignment:
Q  165 acgcatgggccacgaaacaaacccatgaccacatgtttaaaaggatccaaaact 218  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  39011365 acgcatgggccacgaaacaaacccatgaccacatgtttaaagggacccaaaact 39011312  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 37412849 - 37412920
Alignment:
Q  133 ttcttccctttcaatcaatttttctctatcatacgcatgggccacgaaacaaacccatgaccacatgtttaaaagg 208  Q
    ||||| |||||||||||||||||   | ||||||||||| || |||||||||||| || |||||||||||||||||    
T  37412849 ttctttcctttcaatcaattttt---tctcatacgcatgagc-acgaaacaaaccaataaccacatgtttaaaagg 37412920  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 8683973 - 8684064
Alignment:
Q  126 aaccactttcttccctttcaatcaatttttctctatcatacgcatgggccacgaaacaaacccatgaccacatgtttaaaaggatccaaaact 218  Q
    ||||||||||||||||||||||| |||||||||| |||| |||||||||||| |||||||||||||||||||||||||||  || ||||||||    
T  8683973 aaccactttcttccctttcaatcgatttttctctctcat-cgcatgggccacaaaacaaacccatgaccacatgtttaaagagacccaaaact 8684064  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 15829341 - 15829398
Alignment:
Q  161 tcatacgcatgggccacgaaacaaacccatgaccacatgtttaaaaggatccaaaact 218  Q
    |||||| |||| |||||||||||||||||| | |||||||||||| ||| ||||||||    
T  15829341 tcatacccatgagccacgaaacaaacccataaacacatgtttaaagggacccaaaact 15829398  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 6420649 - 6420609
Alignment:
Q  163 atacgcatgggccacgaaacaaacccatgaccacatgttta 203  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  6420649 atacgcatgagccacgaaacaaactcatgaccacatgttta 6420609  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 25703291 - 25703205
Alignment:
Q  13 agcagagaccccaaaccttatttttatccaacatttttccttcttcagatttgtcaaacaccaattttattatttctcatacatata 99  Q
    |||||| |||||||||||| |||| ||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||    
T  25703291 agcagaaaccccaaaccttcttttcatctaacatttttccttcttcaggtttgccaaacaccaattttattatttctcatatatata 25703205  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 25703166 - 25703088
Alignment:
Q  126 aaccactttcttccctttcaatcaatttttctctatcatacgcatgggccacgaaacaaacccatgaccacatgtttaa 204  Q
    |||||||||||||| |||||||| |||||||||| |||||||||||| ||||||||||||| ||| | |||||||||||    
T  25703166 aaccactttcttccttttcaatcgatttttctctctcatacgcatggaccacgaaacaaactcataaacacatgtttaa 25703088  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 4047488 - 4047397
Alignment:
Q  126 aaccactttcttccctttcaatcaatttttctctatcatacgcatgggccacgaaacaaacccatgaccacatgtttaaaaggatccaaaact 218  Q
    ||||||||||||||||||||||| ||||| || | ||||||||||||| ||||||||||||||||||| ||||||||||| ||| ||||||||    
T  4047488 aaccactttcttccctttcaatcgatttt-ctttctcatacgcatgggtcacgaaacaaacccatgacgacatgtttaaagggacccaaaact 4047397  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 5552468 - 5552389
Alignment:
Q  20 accccaaaccttatttttatccaacatttttccttcttcagatttgtcaaacaccaattttattatttctcatacatata 99  Q
    |||||||||||| |||| ||| ||| ||||||||| ||||| |||| |||||||||||| ||||||||||| ||||||||    
T  5552468 accccaaaccttcttttcatctaacttttttccttattcaggtttgccaaacaccaattctattatttctcttacatata 5552389  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 4047966 - 4047919
Alignment:
Q  42 aacatttttccttcttcagatttgtcaaacaccaattttattatttct 89  Q
    ||||||||||||||||||  |||| |||||||||||||||||||||||    
T  4047966 aacatttttccttcttcaagtttgccaaacaccaattttattatttct 4047919  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 26658122 - 26658203
Alignment:
Q  136 ttccctttcaatcaatttttctctatcatacgcatgggccacgaaacaaacccatgaccacatgtttaaaaggatccaaaact 218  Q
    ||||||||||||| |||||| | | || |||||||| | |||||||||||| |||||||||||||||||| ||| | ||||||    
T  26658122 ttccctttcaatcgattttttt-tctcgtacgcatgagtcacgaaacaaactcatgaccacatgtttaaagggacctaaaact 26658203  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 3334938 - 3335024
Alignment:
Q  15 cagagaccccaaaccttatttttatccaacatttttccttcttcagatttgtcaaacaccaattttattatttctcatacatatact 101  Q
    |||| ||| |||||||| |||| ||||||| |||||||||||| || |||| ||||||| |||| ||||||||||||||||||||||    
T  3334938 cagaaaccacaaaccttcttttcatccaacctttttccttctttaggtttgccaaacactaattctattatttctcatacatatact 3335024  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 23978734 - 23978651
Alignment:
Q  133 ttcttccctttcaatcaatttttctctatcatacgcatgggccacgaaacaaacccatgaccacatgtttaaaaggatccaaaact 218  Q
    |||||||||||||||| |||||| | | ||||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  23978734 ttcttccctttcaatcgattttttt-tctcatacgcatgagccacgaaacaaacc-atgaccacatgtttaaagggacccaaaact 23978651  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 43454293 - 43454216
Alignment:
Q  139 cctttcaatcaatttttctctatcatacgcatgggccacgaaacaaacccatgaccacatgtttaaaaggatccaaaact 218  Q
    |||||||||||| |||| |||  ||||| |||| |||||||||||||| |||||||||||||||||| ||| ||||||||    
T  43454293 cctttcaatcaaattttttct--catacacatgagccacgaaacaaactcatgaccacatgtttaaagggacccaaaact 43454216  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 46194930 - 46195015
Alignment:
Q  133 ttcttccctttcaatcaatttttctctatcatacgcatgggccacgaaacaaacccatgaccacatgtttaaaaggatccaaaact 218  Q
    |||||| ||||||||| |||||| | | ||||||||||| ||| |||||||||| ||||| |||||||| ||| ||| ||||||||    
T  46194930 ttcttctctttcaatcgatttttttttctcatacgcatgagccgcgaaacaaactcatgatcacatgttaaaagggacccaaaact 46195015  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 16861331 - 16861262
Alignment:
Q  133 ttcttccctttcaatcaatttttctctatcatacgcatgggccacgaaacaaacccatgaccacatgtttaaa 205  Q
    ||||||| |||||||| ||||||   | ||||||||||| | |||||||||||| ||||||||||||||||||    
T  16861331 ttcttccatttcaatcgattttt---tctcatacgcatgagtcacgaaacaaactcatgaccacatgtttaaa 16861262  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 23099016 - 23099086
Alignment:
Q  133 ttcttccctttcaatcaatttttctctatcatacgcatgggccacgaaacaaacccatgaccacatgtttaaa 205  Q
    |||||||||||||||  ||||||  ||  |||| ||||| | |||||||||||| ||||||||||||||||||    
T  23099016 ttcttccctttcaattgattttttcct--catatgcatgagtcacgaaacaaactcatgaccacatgtttaaa 23099086  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 44949019 - 44948942
Alignment:
Q  24 caaaccttatttttatccaacatttttccttcttcagatttgtcaaacaccaattttattatttctcatacatatact 101  Q
    |||||||| |||| ||| ||||||||||||||||||| |||||||| | |||||| ||||||||||| ||||||||||    
T  44949019 caaacctttttttcatctaacatttttccttcttcaggtttgtcaagcgccaattctattatttctcttacatatact 44948942  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 24231692 - 24231737
Alignment:
Q  173 gccacgaaacaaacccatgaccacatgtttaaaaggatccaaaact 218  Q
    ||||| |||||||||||| |||||||||||||| ||| ||||||||    
T  24231692 gccacaaaacaaacccattaccacatgtttaaagggacccaaaact 24231737  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 50960096 - 50960019
Alignment:
Q  136 ttccctttcaatcaatttttctctatcatacgcatgggccacgaaacaaacccatgaccacatgtttaaaaggatccaaaa 216  Q
    ||||||||||||| |||||| |||  |||||||||| || |||||||||| | ||||||| ||||||||| ||| ||||||    
T  50960096 ttccctttcaatcgatttttttct--catacgcatgagcgacgaaacaaa-caatgaccatatgtttaaagggacccaaaa 50960019  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 44826001 - 44826033
Alignment:
Q  173 gccacgaaacaaacccatgaccacatgtttaaa 205  Q
    |||||||||||||| ||||||||||||||||||    
T  44826001 gccacgaaacaaactcatgaccacatgtttaaa 44826033  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 15401508 - 15401580
Alignment:
Q  126 aaccactttcttccctttcaatcaatttttctctatcatacgcatgggccacgaaacaaacccatgaccacatgtttaaa 205  Q
    |||||||||||| ||||||||||||||||| ||| ||       ||||||||||||||||||||||||||||||||||||    
T  15401508 aaccactttctttcctttcaatcaatttttttctctc-------tgggccacgaaacaaacccatgaccacatgtttaaa 15401580  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 19779175 - 19779091
Alignment:
Q  134 tcttccctttcaatcaatttttctctatcatacgcatgggccacgaaacaaacccatgaccacatgtttaaaaggatccaaaact 218  Q
    |||||||||| |||| |||||  | | |||||| |||| |||| |||||||||||||||||||||||||||| |||  |||||||    
T  19779175 tcttcccttttaatcgattttgttttctcatacacatgagccatgaaacaaacccatgaccacatgtttaaagggacacaaaact 19779091  T

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