View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1431_high_1 (Length: 520)
Name: NF1431_high_1
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1431_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 10 - 379
Target Start/End: Original strand, 26357940 - 26358305
Alignment:
| Q |
10 |
ataggttctaacataactgaaatatagtttcaatttcatgtttaatagggttcaaatataagcttaatcaccaaattcagctactctagactctggtgtc |
109 |
Q |
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| T |
26357940 |
ataggttctaacataactgaaatatagtttcaatttcatgtttaatagggttcaaatata-gcttaatcacctaattcagctactctagactctg-tgtc |
26358037 |
T |
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| Q |
110 |
gctatcggaatttgatcagaacagaaatcaacgttgatgacaataatgatttttgacaacacataaactcgcagccaattccccttatttttgtttttcg |
209 |
Q |
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| T |
26358038 |
gctatcggaatttgatcagaacaggaatcaacattgatgacaataatgattttggacaacacataaactcgcagccaattccccttatttttgtttttca |
26358137 |
T |
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| Q |
210 |
agtgccttgtgattaaaattaacagattcaattttaatgttcattattactaatttaccattcaaaaattgattaaccttaacaggttcaaacaacatct |
309 |
Q |
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| T |
26358138 |
agtgccttgtgattaaaattaacagattcaattttaatgttcatcattactaatttaccattcaaaaattgattaaccttaacaggttcaaacaacatct |
26358237 |
T |
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| Q |
310 |
ttctctcaacagcaagagctgggcactaataggataatcataaacacacaagaaatcaacaatttgtgat |
379 |
Q |
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| T |
26358238 |
t--tctcaacagcaagagccgggcgctaataggataatcacaaacacacaagaaatcaacaatttgtgat |
26358305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 397 - 505
Target Start/End: Original strand, 26358374 - 26358482
Alignment:
| Q |
397 |
ggagtattgaatcagagatttaaaattcaataaattaacaaagacgaaaggaacaattatatattggcaagagttagaaaagtgatacagtactaaaaga |
496 |
Q |
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| T |
26358374 |
ggagtactgaatcagagatttaaaattcaataaattaacaaagacgaaaggaacaattatatattggcaagagttagaaaagtgatacagtactaaaaga |
26358473 |
T |
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| Q |
497 |
ttcaacaag |
505 |
Q |
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| T |
26358474 |
ttcaacaag |
26358482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 448 - 500
Target Start/End: Complemental strand, 30012366 - 30012314
Alignment:
| Q |
448 |
aacaattatatattggcaagagttagaaaagtgatacagtactaaaagattca |
500 |
Q |
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| T |
30012366 |
aacaattatatattgccaagagttagaaaagtgatacaatactaaaagattca |
30012314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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