View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1431_high_10 (Length: 330)
Name: NF1431_high_10
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1431_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 80 - 322
Target Start/End: Original strand, 7802429 - 7802672
Alignment:
| Q |
80 |
agcacaccaacacaacatttgaataaagggcacaaataaattgacnnnnnnnttgattatagtacctgacaaaacaaaattactttagcccagaaaggta |
179 |
Q |
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| T |
7802429 |
agcacaccaacacaacatttgaataaagggcacaaataaattaacaaaaaaattgattatagtacctgacaaaacaaaattactttagcccagaaaggta |
7802528 |
T |
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| Q |
180 |
ctaagctctgaaaaaattgattatggtgagaaagcttcactcttttcatg-nnnnnnnnnnatgacacgtgacatgcacgtgttcccaatttggattatt |
278 |
Q |
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| T |
7802529 |
ctaagctcagaaaaaatttattatggtgagaaagcttcactcttttcatgtttttttttttatgacacgtgacatgcacgtgttaccaattttgattatt |
7802628 |
T |
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| Q |
279 |
ttgaaaacgacgtcgttttaagttttcacagtttctagtattat |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7802629 |
ttgaaaacgacgtcgttttaagttttcacagtttctagtattat |
7802672 |
T |
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