View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1431_high_11 (Length: 324)
Name: NF1431_high_11
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1431_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 51114932 - 51115240
Alignment:
| Q |
1 |
aacacaacgatcacatgtagaacaatgtttcgcacgaagaggcctgacaatcttgcatgttgaacaaagttgggaccaatttccagctagcaaaaagggc |
100 |
Q |
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| T |
51114932 |
aacacaacgatcacatgtagaacaatgtttcgcacgaagaggcctaacaatcttgcatgttgaacaaagttgggaccaatttccagctagcaaaaagggc |
51115031 |
T |
|
| Q |
101 |
tcataatcttgcattttcttaatgtcataatgcccattcattctgatataacctggatccttcttgctacacatatgaaacatcacaaatccaacagtag |
200 |
Q |
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| T |
51115032 |
tcataatcttgcattttcttaatgtcataatgcccattcattctgatataacctggatccttcttgctacacatatgaaacatcacaaatccaacagtag |
51115131 |
T |
|
| Q |
201 |
caagtaacgctccaaaccaaccaaaaaggccggttgtagttgttagcgttggcatatttgttgccaacacgaccgaataaatataggtgaaaaatagcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51115132 |
caagtaacgctccaaaccaaccaaaaaggccggttgtagttgttagcgttggcatatttgttgccaacacgaccgaataaatataggtgaaaaatagcat |
51115231 |
T |
|
| Q |
301 |
agaaattat |
309 |
Q |
| |
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||||||||| |
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| T |
51115232 |
agaaattat |
51115240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 51105388 - 51105473
Alignment:
| Q |
9 |
gatcacatgtagaacaatgtttcgcacgaagaggcctgacaatcttgcatgttgaacaaagttgggaccaatttccagctagcaaa |
94 |
Q |
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| T |
51105388 |
gatcacatatagcacaatgtttcgtacgaagaggcctgataatcttgcgtgttgcacaaatttgggaccaatttccagctagcaaa |
51105473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 51105533 - 51105636
Alignment:
| Q |
130 |
atgcccattcattctgatataacctggatccttcttgctacacatatgaaacatcacaaatccaacagtagcaagtaacgctccaaaccaaccaaaaagg |
229 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||| ||| | |||||| || ||||||||||| |||||| |||||||||| |||||||| |
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| T |
51105533 |
atgcccattcattctgatattacctggatccttggtgctacacctataagacatcaacaacccaacagtagctagtaacactccaaaccatgcaaaaagg |
51105632 |
T |
|
| Q |
230 |
ccgg |
233 |
Q |
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|||| |
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| T |
51105633 |
ccgg |
51105636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 48038568 - 48038517
Alignment:
| Q |
2 |
acacaacgatcacatgtagaacaatgtttcgcacgaagaggcctgacaatct |
53 |
Q |
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| T |
48038568 |
acacaacgatcacatgtagaacaatgttttgcacgaagaggtctgacaatct |
48038517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 264
Target Start/End: Complemental strand, 48037342 - 48037243
Alignment:
| Q |
165 |
tgctacacatatgaaacatcacaaatccaacagtagcaagtaacgctccaaaccaaccaaaaaggccggttgtagttgttagcgttggcatatttgttgc |
264 |
Q |
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|||||||| ||| ||||||||| ||||||||||||||||| ||| |||||||||| |||| ||||| | || | ||| ||| |||||||||||||||| |
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| T |
48037342 |
tgctacacctataaaacatcaccaatccaacagtagcaagcaacactccaaaccatgcaaagaggccagctgatgctgtcagctttggcatatttgttgc |
48037243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 48038384 - 48038337
Alignment:
| Q |
47 |
acaatcttgcatgttgaacaaagttgggaccaatttccagctagcaaa |
94 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48038384 |
acaaccttgcatgttgcacaaagttgggaccaatttccagctagcaaa |
48038337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 48038096 - 48038064
Alignment:
| Q |
130 |
atgcccattcattctgatataacctggatcctt |
162 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
48038096 |
atgcccattcgttctgatataacctggatcctt |
48038064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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