View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1431_high_12 (Length: 321)

Name: NF1431_high_12
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1431_high_12
NF1431_high_12
[»] chr5 (1 HSPs)
chr5 (16-304)||(13973554-13973849)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 13973849 - 13973554
Alignment:
Q  16 atttaaaaccttattccatgtagtatttgagaagatctgtaaacacaataaaataaggagctccatgtatttctcgtgttaagattccccttctaattgg 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13973849 atttaaaaccttattccatgtagtgtttgagaagatctgtaaacacaataaaataaggagctccatgtatttctcgtgttaagattccccttctaattgg 13973750  T
Q  116 ccttaataaggaacctgaagttttatg-------actcaaagtatgcatgattacattgaagggaagatgggaaatgatgctatgatgatgatgattcgt 208  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13973749 ccttaataaggaacctgaagttttatggtcaaagactcaaagtatgcatgattacattgaagggaagatgggaaatgatgatatgatgatgatgattcgt 13973650  T
Q  209 tgtccttgaatgaggacaaactttttcatatggtaacatcgctgattgagtatgggtttggtttggttttcagagaccacgcacacatagcattga 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13973649 tgtccttgaatgaggacaaactttttcatatggtaacatcgctgattgagtatgggtttggtttggttttcagagaccacgcacacatagcattga 13973554  T

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