View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1431_high_13 (Length: 275)

Name: NF1431_high_13
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1431_high_13
NF1431_high_13
[»] chr8 (1 HSPs)
chr8 (17-264)||(41965943-41966191)
[»] scaffold0667 (1 HSPs)
scaffold0667 (17-264)||(5139-5387)
[»] chr2 (24 HSPs)
chr2 (40-264)||(8572745-8572973)
chr2 (20-150)||(10372676-10372807)
chr2 (17-264)||(10336497-10336739)
chr2 (17-150)||(9316816-9316953)
chr2 (17-126)||(10348622-10348731)
chr2 (49-153)||(14551111-14551215)
chr2 (17-146)||(9321789-9321919)
chr2 (17-172)||(9060319-9060478)
chr2 (37-153)||(9292719-9292836)
chr2 (17-126)||(9329418-9329527)
chr2 (40-124)||(9283418-9283502)
chr2 (35-157)||(10353932-10354055)
chr2 (17-134)||(9275333-9275451)
chr2 (37-126)||(9357935-9358024)
chr2 (42-126)||(7114891-7114975)
chr2 (41-125)||(12011838-12011922)
chr2 (17-125)||(12018135-12018243)
chr2 (47-125)||(9365415-9365493)
chr2 (49-125)||(7612716-7612792)
chr2 (62-125)||(8577689-8577752)
chr2 (47-125)||(8578776-8578854)
chr2 (184-264)||(9357842-9357922)
chr2 (41-126)||(12005410-12005495)
chr2 (49-118)||(17565367-17565436)
[»] chr4 (2 HSPs)
chr4 (17-157)||(26575666-26575807)
chr4 (81-134)||(561980-562034)
[»] chr1 (4 HSPs)
chr1 (49-209)||(29442612-29442770)
chr1 (49-227)||(29423934-29424110)
chr1 (49-203)||(29452604-29452756)
chr1 (49-203)||(29467078-29467230)
[»] chr3 (1 HSPs)
chr3 (41-152)||(37463314-37463426)
[»] chr5 (1 HSPs)
chr5 (49-124)||(36225571-36225646)


Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 41965943 - 41966191
Alignment:
Q  17 aaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttca 116  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41965943 aaatcttctccctattaccggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttcatcaaccttca 41966042  T
Q  117 cctca-aaaatccctcaatcgatccttaatccttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccactc 215  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966043 cctcagaaaatccctcaatcgatccttaatccttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccactc 41966142  T
Q  216 aatcatcctttcttgcgtcacagcaccaacatcactcttctgggttcat 264  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||    
T  41966143 aaccatcctttcttgcgtcacagcaccaacatcactcttctgggttcat 41966191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 5387 - 5139
Alignment:
Q  17 aaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttca 116  Q
    ||||||||||||  ||| ||||||||||| ||||||||||||||||||| || |||||||||  |||| ||||| |||| ||||||||||||||||||||    
T  5387 aaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatccataatcgattctcacaacttcatcaaccttca 5288  T
Q  117 cctcaaaaa-tccctcaatcgatccttaatccttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccactc 215  Q
    || |||||| ||||||||| ||||||| |||||||||||||   |  || |||||||  |||| || |||||||| ||||| ||||||||||||||||||    
T  5287 ccgcaaaaattccctcaatagatccttcatccttcgactcagatccaatatctaccaaatcgaagatgatttctcaaacctcaccaccgccgttccactc 5188  T
Q  216 aatcatcctttcttgcgtcacagcaccaacatcactcttctgggttcat 264  Q
    || || ||||||  |||| |||||||||||||  ||||| | |||||||    
T  5187 aaccaccctttcacgcgtaacagcaccaacattgctcttatcggttcat 5139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 40 - 264
Target Start/End: Original strand, 8572745 - 8572973
Alignment:
Q  40 aaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa-tccctcaatcgat 138  Q
    |||||| ||||||||||||||||||| || |||||||||  |||  ||||| ||||||||||||||| |||||||||||||||||| ||||||||||| |    
T  8572745 aaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgtt 8572844  T
Q  139 ccttaatccttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccg---ttccactcaatcatcctttcttgcgtca 235  Q
    |||||||| |||||| ||||   ||| |||||||  ||||||| ||||||||| | |||||||||||||   |||||||||| ||||||||||   || |    
T  8572845 ccttaatcattcgacgcaactacgatatctaccaaatcgatgatgatttctctgatctaaccaccgccgagtttccactcaaccatcctttctccggtaa 8572944  T
Q  236 cagcaccaacatcactcttctgggttcat 264  Q
    ||||||||| || |||||| | |||||||    
T  8572945 cagcaccaaaattactcttatcggttcat 8572973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 10372807 - 10372676
Alignment:
Q  20 tcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct 119  Q
    |||||||||  ||| ||||||||||| ||||||||||||||||||| || |||||| ||  ||| |||||| |||||||||| |||||||||||||||||    
T  10372807 tcttctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacct 10372708  T
Q  120 -caaaaatccctcaatcgatccttaatccttc 150  Q
     ||||| |||||||||||||||||||||||||    
T  10372707 ccaaaattccctcaatcgatccttaatccttc 10372676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 10336739 - 10336497
Alignment:
Q  17 aaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttca 116  Q
    ||||||||||||  ||| ||||||||||| |||||||||||||||||||||| |||||||||  |||||||||| |||| ||||| ||||||||||||||    
T  10336739 aaatcttctcccgtttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttca 10336640  T
Q  117 cc-tcaaaaatccctcaatcgatccttaatccttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccactc 215  Q
    || |||||| |||||||||     | | ||||| || | ||| || || ||||||||  ||       ||||| |||||||||||||||| |||||||||    
T  10336639 ccttcaaaattccctcaattttaacctcatcctccgtcgcaaaaccgacctctaccacctc------catttccctaacctaaccaccgctgttccactc 10336546  T
Q  216 aatcatcctttcttgcgtcacagcaccaacatcactcttctgggttcat 264  Q
    || ||||||||| | |  ||||||| ||||||| ||||||| |||||||    
T  10336545 aaccatcctttcatccaccacagcaacaacatcgctcttcttggttcat 10336497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 9316953 - 9316816
Alignment:
Q  17 aaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttca 116  Q
    ||||||||||||  ||| | ||||||||| ||||||||||||||||||| || |||||||||  ||| |||||  |||| ||||||||||||||||||||    
T  9316953 aaatcttctcccacttaccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatagattctcacaacttcatcaaccttca 9316854  T
Q  117 cctcaaaaa----tccctcaatcgatccttaatccttc 150  Q
    |||||||||    |||||||||||||||||||||||||    
T  9316853 cctcaaaaataattccctcaatcgatccttaatccttc 9316816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 10348731 - 10348622
Alignment:
Q  17 aaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttca 116  Q
    ||||||||||||  ||| ||||||||||| |||||||||||||||||||||| |||||||||  |||||||||| |||||| ||| ||||||||||||||    
T  10348731 aaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttca 10348632  T
Q  117 cctcaaaaat 126  Q
    ||| ||||||    
T  10348631 cctaaaaaat 10348622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 153
Target Start/End: Complemental strand, 14551215 - 14551111
Alignment:
Q  49 ctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaatccctcaatcgatccttaatcct 148  Q
    |||| |||||||||||| || |||||||||| |||| ||||| ||||||||||||||||||| |||||||| |||| ||||||||| | |||||||||||    
T  14551215 ctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctaaaaattccctcaattgttccttaatcct 14551116  T
Q  149 tcgac 153  Q
    |||||    
T  14551115 tcgac 14551111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 9321919 - 9321789
Alignment:
Q  17 aaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttca 116  Q
    ||||| ||||||  ||| ||||||||||| |||||| |||||||||||| || |||||||||  |||| ||||| |||| ||| ||||||||||||||||    
T  9321919 aaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttca 9321820  T
Q  117 cctcaaaaa-tccctcaatcgatccttaatc 146  Q
     |||||||| ||||||| |||||||||||||    
T  9321819 tctcaaaaattccctcagtcgatccttaatc 9321789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 9060319 - 9060478
Alignment:
Q  17 aaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttca 116  Q
    ||||||||||||  ||| ||||  ||||| ||||||||||||||||||| || |||||||||  |||||||||| |||| ||||||||||  |||||| |    
T  9060319 aaatcttctcccgcttaccggttcaatcacttctccgattccgatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcactaaccttta 9060418  T
Q  117 cctcaaaaat----ccctcaatcgatccttaatccttcgactcaacactgatctctacca 172  Q
    ||||||||||    ||||||||||||   |||||||||||| |||  | |||||||||||    
T  9060419 cctcaaaaataatcccctcaatcgatttataatccttcgacacaaatccgatctctacca 9060478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 153
Target Start/End: Complemental strand, 9292836 - 9292719
Alignment:
Q  37 gtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa-tccctcaatc 135  Q
    ||||||||| ||||| ||||||||||||  || |||||||||  |||| ||||| |||| |||| |||||  ||||||||||||||||| |||||||| |    
T  9292836 gtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaacc 9292737  T
Q  136 gatccttaatccttcgac 153  Q
    ||||||||||||||||||    
T  9292736 gatccttaatccttcgac 9292719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 9329527 - 9329418
Alignment:
Q  17 aaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttca 116  Q
    ||||| ||||||  ||| ||||||||||| ||||||||||||| ||||| || |||||||||  |||| ||||| |||||||||||||||  ||||||||    
T  9329527 aaatcctctcccgcttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttca 9329428  T
Q  117 cctcaaaaat 126  Q
    ||||||||||    
T  9329427 cctcaaaaat 9329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 9283418 - 9283502
Alignment:
Q  40 aaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaa 124  Q
    |||||| | ||||||||||||||||| || ||||||||||||||| ||||  |||| ||||| ||||||||||||||||||||||    
T  9283418 aaatcactactccgattccgatcaacttctaaatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaa 9283502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 10354055 - 10353932
Alignment:
Q  35 cggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctca-aaaatccctcaa 133  Q
    |||||| |||| ||||| ||||||||||||| || |||||| ||  |||| ||||| ||||| |||| ||||||||||||||||||| ||| |||| |||    
T  10354055 cggtaatatcacttctcagattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattcccccaa 10353956  T
Q  134 tcgatccttaatccttcgactcaa 157  Q
    || ||||||||| |||||| ||||    
T  10353955 tcaatccttaattcttcgattcaa 10353932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 9275451 - 9275333
Alignment:
Q  17 aaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttca 116  Q
    ||||||||||||  ||| | ||| ||||| ||||| |||||||||||| ||| |||||||||  ||| || ||  |||||||||||||||||||||||||    
T  9275451 aaatcttctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaaccttca 9275352  T
Q  117 cctcaaaaa-tccctcaat 134  Q
     |||||||| |||||||||    
T  9275351 tctcaaaaattccctcaat 9275333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 9358024 - 9357935
Alignment:
Q  37 gtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat 126  Q
    ||||||||| ||||||| ||  ||||||| || |||||||||  |||||||||| |||| ||||||||||| ||||||||||||||||||    
T  9358024 gtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcataaaccttcacctcaaaaat 9357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 7114891 - 7114975
Alignment:
Q  42 atcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat 126  Q
    |||| |||| |||||||||||||| || |||||||||  |||||||||| |||||||||| |||||||||||||| || ||||||    
T  7114891 atcacttcttcgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaat 7114975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 12011838 - 12011922
Alignment:
Q  41 aatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa 125  Q
    ||||| ||||||||||||| ||||| || |||||||||  |||| ||||| |||| |||||||||| ||| ||||||||||||||    
T  12011838 aatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcacctcaaaaa 12011922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 12018135 - 12018243
Alignment:
Q  17 aaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttca 116  Q
    ||||||||||||  ||| | ||||||||| |||| |||||||| ||||| || |||||||||  |||| ||||| |||| |||||||||| ||| |||||    
T  12018135 aaatcttctcccgcttaccagtaaaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttca 12018234  T
Q  117 cctcaaaaa 125  Q
     ||||||||    
T  12018235 actcaaaaa 12018243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 9365493 - 9365415
Alignment:
Q  47 ttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa 125  Q
    |||||||||||||||||||||| |||||||||  |||| ||||| |||| |||| ||||| |||||| || ||||||||    
T  9365493 ttctccgattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttcaccaacctccatctcaaaaa 9365415  T

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Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 7612792 - 7612716
Alignment:
Q  49 ctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa 125  Q
    ||||||||||||||||  || ||||| |||  |||||||||  |||||||||||||||  |||||||||||||||||    
T  7612792 ctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttcacctcaaaaa 7612716  T

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Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 8577689 - 8577752
Alignment:
Q  62 caacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa 125  Q
    |||| ||||||||| || ||||||||||  |||||||||||||||||||| || ||||||||||    
T  8577689 caacttcgaaatcaatttgatccttaattgattcccacaacttcatcaacttttacctcaaaaa 8577752  T

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Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 8578776 - 8578854
Alignment:
Q  47 ttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa 125  Q
    ||||||||||||||||||  || ||||||||||||||||| ||  ||||||||| ||||| ||| | | ||||||||||    
T  8578776 ttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattacctcaaaaa 8578854  T

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Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 264
Target Start/End: Complemental strand, 9357922 - 9357842
Alignment:
Q  184 atttctctaacctaaccaccgccgttccactcaatcatcctttcttgcgtcacagcaccaacatcactcttctgggttcat 264  Q
    ||||||| ||| | |||||||||||||||||||| || ||||||  |||| |||||||||||||  ||||| | |||||||    
T  9357922 atttctcaaacttcaccaccgccgttccactcaaccaccctttcacgcgtaacagcaccaacatttctcttatcggttcat 9357842  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 12005410 - 12005495
Alignment:
Q  41 aatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat 126  Q
    ||||| ||||||||||||| ||||| ||  |||| |||  |||| ||||| |||| |||||||||| ||||||||| || ||||||    
T  12005410 aatcacttctccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaacttcaccaaccttcatctaaaaaat 12005495  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 17565367 - 17565436
Alignment:
Q  49 ctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacc 118  Q
    |||||| |||||||||| ||||||||||||  ||  |||||  ||||||| ||||||| |||||||||||    
T  17565367 ctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataacttcaccaaccttcacc 17565436  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 26575807 - 26575666
Alignment:
Q  17 aaatcttctccctattatcggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttca 116  Q
    ||||||||||||  ||| |||||| |||| ||||||||||||||||||| || |||||||||  || ||||||| ||||| |||| ||||||||||||||    
T  26575807 aaatcttctcccgtttaccggtaatatcacttctccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttca 26575708  T
Q  117 cctca-aaaatccctcaatcgatccttaatccttcgactcaa 157  Q
    ||||| ||| |||| |||||||||||||||||||||| ||||    
T  26575707 cctcagaaattcccccaatcgatccttaatccttcgattcaa 26575666  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 562034 - 561980
Alignment:
Q  81 atccttaatcaattcccacaacttcatcaaccttcacctcaaaaa-tccctcaat 134  Q
    |||| ||||| |||||||||||||||  ||||||||||||||||| |||||||||    
T  562034 atccataatcgattcccacaacttcactaaccttcacctcaaaaactccctcaat 561980  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 209
Target Start/End: Original strand, 29442612 - 29442770
Alignment:
Q  49 ctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct-caaaaatccctcaatcgatccttaatcc 147  Q
    ||||||||||| ||||| ||||||||||||| |||| ||||| ||||||| ||||||||||| |||||||| ||||| | ||||||||| ||||||||||    
T  29442612 ctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatcc 29442711  T
Q  148 ttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgtt 209  Q
    |||||| ||||  |||| |||||||  ||   || |||||||||||||||||||||| ||||    
T  29442712 ttcgacacaactttgatttctaccaaatc---gaagatttctctaacctaaccaccggcgtt 29442770  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 227
Target Start/End: Complemental strand, 29424110 - 29423934
Alignment:
Q  49 ctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct-caaaaatccctcaatcgatccttaatcc 147  Q
    ||||||||||| |||||||| |||||||||| |||  ||||| ||||||||| ||||||||| |||||||| || || ||| ||||||| ||||||||||    
T  29424110 ctccgattccgttcaacctcaaaatcacttcaatctctaatcgattcccacagcttcatcaagcttcacctccataattccttcaatcgttccttaatcc 29424011  T
Q  148 ttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccactcaatcatcctttc 227  Q
    |||||| |||| ||||| |||||||  ||    | ||||||||||||||||| |||||||||  |||||||| |||||||    
T  29424010 ttcgacacaactctgatttctaccaaatc---aacgatttctctaacctaactaccgccgttaaactcaatcctcctttc 29423934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 203
Target Start/End: Original strand, 29452604 - 29452756
Alignment:
Q  49 ctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct-caaaaatccctcaatcgatccttaatcc 147  Q
    ||||||||||| |||||||| |||||||||| |||| ||||| |||| |||||||||||||| |||||||| ||||| ||||||||||| ||||||||||    
T  29452604 ctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaatcc 29452703  T
Q  148 ttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccacc 203  Q
    |||||| |||| ||| | |||||||  ||    | |||||||||||||||||||||    
T  29452704 ttcgacacaactctgttttctaccaaatc---aacgatttctctaacctaaccacc 29452756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 49 - 203
Target Start/End: Original strand, 29467078 - 29467230
Alignment:
Q  49 ctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct-caaaaatccctcaatcgatccttaatcc 147  Q
    ||||||||||| |||||||| |||||||||| |||| ||||| ||||||||||||||||||| |||||||| | ||| ||||||||||| | ||||||||    
T  29467078 ctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctccgaaattccctcaatcgtttcttaatcc 29467177  T
Q  148 ttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccacc 203  Q
    |||||| |||| | ||| |||||||  ||    | |||||||||||||||||||||    
T  29467178 ttcgacacaactccgatttctaccaaatc---aacgatttctctaacctaaccacc 29467230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 37463426 - 37463314
Alignment:
Q  41 aatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat-ccctcaatcgatc 139  Q
    ||||| ||||||||||||||||||| || |||||||||  ||| |||||| |||| |||||||||||||||||||| ||||||||| ||||||||| |||    
T  37463426 aatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatc 37463327  T
Q  140 cttaatccttcga 152  Q
    | ||||| |||||    
T  37463326 cgtaatcattcga 37463314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 36225646 - 36225571
Alignment:
Q  49 ctccgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaa 124  Q
    ||||||||||||||||| || |||||||||  ||| |||||| |||| ||||||||||  || |||||||||||||    
T  36225646 ctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatcttcacctcaaaa 36225571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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