View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1431_high_4 (Length: 417)
Name: NF1431_high_4
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1431_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 33410812 - 33411010
Alignment:
| Q |
12 |
tatactcaactgttttcgatggtgccatactcttgtgttgtaattgtttcttgataatttgactaaactttgtatattttgttcttatcattcttttggc |
111 |
Q |
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| T |
33410812 |
tatattcaactgttttcgatggtgccatactcttgtgttgtaattgtttcttgataatttgactaaactttgtatattttgttcttatcattcttttggc |
33410911 |
T |
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| Q |
112 |
attcataagaaaaatagtaccttttttaagtgaaaaggcaaaatggaaaagttgatgaatttttataaggaatttattactattactatatcaatatat |
210 |
Q |
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| T |
33410912 |
attcataagaaaaatagtactttttttaagtgaaaaggcaaaatgcaaaagttgatgaatttttataaggaatttattactattactatatcaatatat |
33411010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 264 - 402
Target Start/End: Original strand, 33411976 - 33412114
Alignment:
| Q |
264 |
taataccttgagtaagatagaatcacattgggtaataccttgataggattattgcatataatatatgtaaatggtcaaatttcaaaccccacacacccat |
363 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
33411976 |
taataccttgagtaagatagaatcacattgagtaataccttgatagggttattgcaaataatatatgtaaagggtcagatttcaaaccccacacacccat |
33412075 |
T |
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| Q |
364 |
ttattcatctttaaaaggtgaatttctaatcattaaatt |
402 |
Q |
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| T |
33412076 |
ttattcatctttaagaggcgaatttctaatcattaaatt |
33412114 |
T |
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