View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1431_high_8 (Length: 338)
Name: NF1431_high_8
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1431_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 6181792 - 6181494
Alignment:
| Q |
18 |
tgaagaacgaccctctgctcgcactcctcctagacagagttaaaatcaccaaagacacaccaaccaaatacccccaaagcattaaaagtactcatcatat |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6181792 |
tgaagaacgaccctctgctcgcactcctcctagactgagttaaaatcaccaaagacacaccaaccaaatacccccaaagcattaaaagtactcatcatat |
6181693 |
T |
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| Q |
118 |
gatcccacattacccttttctcccccaatctaggcacatccccaaatagtcgggggctccaaaaagagaagactaaagtcaagttggttttacatcaaat |
217 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6181692 |
gatcccacattacccttttctcccctaatctaggcacatccccatatagtcgggg-ctccaaaaagagaagactaaagtcaagttggttttacatcaaat |
6181594 |
T |
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| Q |
218 |
agacataatcccaacattatgtcaaccgacggagtgaaactccaatcacaaaaagaattctatcaaaggtaaataaattagagcatatgaaatttgatct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6181593 |
agacataatcccaacattatgtcaaccgacggagtgaaactccaatcacaaaaagaattctatcaaaggtaaataaattagagcatatgaaatttgatct |
6181494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 6221967 - 6221669
Alignment:
| Q |
18 |
tgaagaacgaccctctgctcgcactcctcctagacagagttaaaatcaccaaagacacaccaaccaaatacccccaaagcattaaaagtactcatcatat |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6221967 |
tgaagaacgaccctctgctcgcactcctcctagactgagttaaaatcaccaaagacacaccaaccaaatacccccaaagcattaaaagtactcatcatat |
6221868 |
T |
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| Q |
118 |
gatcccacattacccttttctcccccaatctaggcacatccccaaatagtcgggggctccaaaaagagaagactaaagtcaagttggttttacatcaaat |
217 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6221867 |
gatcccacattacccttttctcccctaatctaggcacatccccatatagtcgggg-ctccaaaaagagaagactaaagtcaagttggttttacatcaaat |
6221769 |
T |
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| Q |
218 |
agacataatcccaacattatgtcaaccgacggagtgaaactccaatcacaaaaagaattctatcaaaggtaaataaattagagcatatgaaatttgatct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6221768 |
agacataatcccaacattatgtcaaccgacggagtgaaactccaatcacaaaaagaattctatcaaaggtaaataaattagagcatatgaaatttgatct |
6221669 |
T |
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