View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1431_high_9 (Length: 332)
Name: NF1431_high_9
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1431_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 8315519 - 8315214
Alignment:
| Q |
17 |
tcatcagacccgccttcaccaacatgatactctaccatatttatctcacttcgatcaacataagagtaccacatcacttcatcctaaatcacaatctctc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8315519 |
tcatcagacccgccttcaccaacatgatactctaccatatttatctcacttggatcaacataagagtaccacatcactttatcctaaatcacaatctctc |
8315420 |
T |
|
| Q |
117 |
tgttcggacgaacctttatcatcatgaatggtccatcccatcctttcctacctttcctcccnnnnnnnnnccatagaactccgttggatttcttagcata |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8315419 |
tgttcggacgaacctttatcatcatgaatggtccatcccatcctttcctacctttcctcccaaaaagaaaccatagaactccgttggatttcttagcata |
8315320 |
T |
|
| Q |
217 |
ccatgatccccgatttcaaagatttcttctttatccttccaagagccctcagtagctccttccacttttccacttgtgttcatgttaactccattttctc |
316 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8315319 |
ccatgatccccaacttcaaagatttcttctttatccttccaagagcccccagtagctccttccacttttccacttatgttcatgttaactccattttctc |
8315220 |
T |
|
| Q |
317 |
cctttg |
322 |
Q |
| |
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||||| |
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| T |
8315219 |
actttg |
8315214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 30 - 320
Target Start/End: Original strand, 16817749 - 16818037
Alignment:
| Q |
30 |
cttcaccaacatgatactctaccatatttatctcacttcgatcaacataagagtaccacatcacttcatcctaaatcacaatctctctgttcggacgaac |
129 |
Q |
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||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||||| || |||||||| |||||||||||||| |||| ||| ||| |
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| T |
16817749 |
cttcaccaacatgatactctaccatctttatttcacttggatcaacataggagtaccagatgacttcatctcaaatcacaatctctttgttatgacaaac |
16817848 |
T |
|
| Q |
130 |
ctttatcatcatgaatggtccatcccatcctttcctacctttcctcccnnnnnnnnnccatagaactccgttggatttcttagcataccatgatccccga |
229 |
Q |
| |
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||| | ||||||||||||| |||| ||||||||||| |||||||||| ||||| || | ||||||| ||||| ||| || ||||||||| |
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| T |
16817849 |
cttcttgatcatgaatggtctatccaatcctttcctagctttcctccc--aaagaaaccatataaatttgttggatgtcttaacatgacacgatccccga |
16817946 |
T |
|
| Q |
230 |
tttcaaagatttcttctttatccttccaagagccctcagtagctccttccacttttccacttgtgttcatgttaactccattttctccctt |
320 |
Q |
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||||||| |||||||| ||||||| | |||||| || |||||| |||||||||||||||| |||||||||| ||||| ||||||||||| |
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| T |
16817947 |
cttcaaagtcttcttcttcatccttctaggagcccccaatagctctttccacttttccacttatgttcatgttgactcctttttctccctt |
16818037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 30 - 320
Target Start/End: Original strand, 16856906 - 16857194
Alignment:
| Q |
30 |
cttcaccaacatgatactctaccatatttatctcacttcgatcaacataagagtaccacatcacttcatcctaaatcacaatctctctgttcggacgaac |
129 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||||| || |||||||| |||||||||||||| |||| ||| ||| |
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| T |
16856906 |
cttcaccaacatgatactctaccatctttatttcacttggatcaacataggagtaccagatgacttcatctcaaatcacaatctctttgttatgacaaac |
16857005 |
T |
|
| Q |
130 |
ctttatcatcatgaatggtccatcccatcctttcctacctttcctcccnnnnnnnnnccatagaactccgttggatttcttagcataccatgatccccga |
229 |
Q |
| |
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||| | ||||||||||||| |||| ||||||||||| |||||||||| ||||| || | ||||||| ||||| ||| || ||||||||| |
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| T |
16857006 |
cttcttgatcatgaatggtctatccaatcctttcctagctttcctccc--aaagaaaccatataaatttgttggatgtcttaacatgacacgatccccga |
16857103 |
T |
|
| Q |
230 |
tttcaaagatttcttctttatccttccaagagccctcagtagctccttccacttttccacttgtgttcatgttaactccattttctccctt |
320 |
Q |
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||||||| |||||||| ||||||| | |||||| || |||||| |||||||||||||||| |||||||||| ||||| ||||||||||| |
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| T |
16857104 |
cttcaaagtcttcttcttcatccttctaggagcccccaatagctctttccacttttccacttatgttcatgttgactcctttttctccctt |
16857194 |
T |
|
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