View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1431_low_10 (Length: 371)
Name: NF1431_low_10
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1431_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 2 - 144
Target Start/End: Original strand, 44827162 - 44827304
Alignment:
| Q |
2 |
ttatatgtgcagtgttgcagcaacaaagagtcgtgtcatattcctcgggaccggtgaacatatggatgagtttgaagtttttgaagtccagtcatttgtc |
101 |
Q |
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| T |
44827162 |
ttatatgtgcagtgttgcagcaacaaagagtcctgtcatattcataggaactggtgaacatatggatcagtttgaagtatttgaagttcagccgtttgtt |
44827261 |
T |
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| Q |
102 |
agtcgtttattaggtgtgtactttttatgtttcttgtttcact |
144 |
Q |
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| T |
44827262 |
agtcgtctattaggtgtgtactttttttatttcttgtttcact |
44827304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 33167252 - 33167144
Alignment:
| Q |
7 |
tgtgcagtgttgcagcaacaaagagtcgtgtcatattcctcgggaccggtgaacatatggatgagtttgaagtttttgaagtccagtcatttgtcagtcg |
106 |
Q |
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| T |
33167252 |
tgtgcagtgttgcagcaacaaagagtcctgtcatattcatagcaaccggtgaacatatggatgagtttgaagcttttgaagttaagtcgtttgttagtcg |
33167153 |
T |
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| Q |
107 |
tttattagg |
115 |
Q |
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| T |
33167152 |
tctattagg |
33167144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 33115541 - 33115454
Alignment:
| Q |
1 |
gttatatgtgcagtgttgcagcaacaaagagtcgtgtcatattcctcgggaccggtgaacatatggatgagtttgaagtttttgaagt |
88 |
Q |
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| T |
33115541 |
gttatatgtgcagtgttgcagcaacaaagagttcggtcatattcataggaactggtgaacatatggatgagtttgaagtttttgaagt |
33115454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 2203279 - 2203165
Alignment:
| Q |
12 |
agtgttgcagcaacaaagagtcgtgtcatattcctcgggaccggtgaacatatggatgagtttgaagtttttgaagtccagtcatttgtcagtcgtttat |
111 |
Q |
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|||||||| || |||||||||| |||||||||| | || || || ||||| |||||||| |||||||||||||| || | |||||||||||||| ||| |
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| T |
2203279 |
agtgttgcggctacaaagagtcctgtcatattcattggaactggagaacacatggatgaatttgaagtttttgatgttaaaccatttgtcagtcgtctat |
2203180 |
T |
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| Q |
112 |
taggtgtgtactttt |
126 |
Q |
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||||||||||||||| |
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| T |
2203179 |
taggtgtgtactttt |
2203165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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