View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1431_low_22 (Length: 251)

Name: NF1431_low_22
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1431_low_22
NF1431_low_22
[»] chr3 (4 HSPs)
chr3 (1-242)||(42603646-42603885)
chr3 (1-43)||(7515201-7515243)
chr3 (1-49)||(11042084-11042131)
chr3 (1-37)||(22838288-22838324)
[»] chr7 (3 HSPs)
chr7 (1-49)||(19683440-19683488)
chr7 (1-61)||(28039833-28039893)
chr7 (1-49)||(19087433-19087481)
[»] scaffold0027 (1 HSPs)
scaffold0027 (9-49)||(8111-8151)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-61)||(166766-166826)
[»] chr2 (7 HSPs)
chr2 (1-61)||(30804356-30804416)
chr2 (8-61)||(12238209-12238262)
chr2 (2-66)||(27863898-27863962)
chr2 (10-43)||(16865928-16865961)
chr2 (1-38)||(31063126-31063163)
chr2 (1-49)||(21938066-21938114)
chr2 (1-49)||(36514647-36514695)
[»] chr6 (3 HSPs)
chr6 (1-40)||(2255929-2255968)
chr6 (1-43)||(3341307-3341349)
chr6 (1-37)||(724731-724767)
[»] chr8 (2 HSPs)
chr8 (1-58)||(17696169-17696226)
chr8 (1-49)||(2111042-2111090)
[»] chr4 (3 HSPs)
chr4 (10-49)||(22347289-22347328)
chr4 (10-43)||(22057970-22058003)
chr4 (1-49)||(47789362-47789410)
[»] chr1 (5 HSPs)
chr1 (2-49)||(32348434-32348481)
chr1 (1-39)||(31117600-31117638)
chr1 (1-39)||(32602967-32603005)
chr1 (1-39)||(35272489-35272527)
chr1 (3-37)||(43024596-43024630)
[»] chr5 (2 HSPs)
chr5 (6-39)||(6462250-6462283)
chr5 (10-43)||(33535387-33535420)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 42603885 - 42603646
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatcaattaacttatatgctataagctttaagctattttatgaatcttccgtaataagttcgtcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||    
T  42603885 ttcaaccgctaattttattaaacactacaaattcaatcaattaacttatatgctataagctttaagctattttataaatattccgcaataaattcgtcat 42603786  T
Q  101 ctattataaaattagtttatcaactattcactatttannnnnnnacaaaacggagcctaagttcgttggccatatagggtcaagtttaggatcatatcat 200  Q
    ||||||| ||| |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  42603785 ctattat-aaactagtttatcaactattcactattta-ttttttacaaaacggagcctaagttcgttggccatataggttcaagtttaggatcatgtcat 42603688  T
Q  201 ttaacgtgttaggaaatcgagtggttaaagaaggatgatgtc 242  Q
    |||||||| ||||||||||||| ||| |||||||||||||||    
T  42603687 ttaacgtggtaggaaatcgagttgtttaagaaggatgatgtc 42603646  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 7515243 - 7515201
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatcaatta 43  Q
    |||||||| |||||||||||||||||| ||||| |||||||||    
T  7515243 ttcaaccgttaattttattaaacactataaatttaatcaatta 7515201  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11042084 - 11042131
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatcaattaacttat 49  Q
    ||||||| |||||||||  |||||| |||||||||||||||||||||||    
T  11042084 ttcaaccactaattttaccaaacac-acaaattcaatcaattaacttat 11042131  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22838288 - 22838324
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaat 37  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  22838288 ttcaaccgctaattttatcaaagactacaaattcaat 22838324  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19683488 - 19683440
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatcaattaacttat 49  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  19683488 ttcaaccgctatttttatcaaacactacaaattcaatcaattaacttat 19683440  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28039893 - 28039833
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatcaattaacttatatgctataagct 61  Q
    ||||||| |||||||||| ||||||||||||| ||||||||||| |||  |||||| ||||    
T  28039893 ttcaacctctaattttatcaaacactacaaatgcaatcaattaatttaattgctatcagct 28039833  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19087433 - 19087481
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatcaattaacttat 49  Q
    |||||||| ||||||||| ||| |||| ||||||||||| |||||||||    
T  19087433 ttcaaccgttaattttatcaaatactataaattcaatcatttaacttat 19087481  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 8111 - 8151
Alignment:
Q  9 ctaattttattaaacactacaaattcaatcaattaacttat 49  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  8111 ctaattttatcaaacactacaaattcaatcaattaacttat 8151  T

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Target: scaffold0010 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 166766 - 166826
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatcaattaacttatatgctataagct 61  Q
    |||||||||||||||||  ||||||||||||||||||||  || ||||| |||||||||||    
T  166766 ttcaaccgctaattttaccaaacactacaaattcaatcagctagcttatttgctataagct 166826  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30804416 - 30804356
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatcaattaacttatatgctataagct 61  Q
    |||||||||||||||||  |||||||||||||||||| | ||| ||||| |||||||||||    
T  30804416 ttcaaccgctaattttacgaaacactacaaattcaattagttagcttatctgctataagct 30804356  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 12238262 - 12238209
Alignment:
Q  8 gctaattttattaaacactacaaattcaatcaattaacttatatgctataagct 61  Q
    ||||||||||  |||||||||||||||||||||||| ||||| || ||||||||    
T  12238262 gctaattttacaaaacactacaaattcaatcaattagcttatctgttataagct 12238209  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 27863898 - 27863962
Alignment:
Q  2 tcaaccgctaattttattaaacactacaaattcaatcaattaacttatatgctataagctttaag 66  Q
    ||||||| ||||||||| ||||||||||||||||||||  ||| |||| | ||||||||| ||||    
T  27863898 tcaaccggtaattttatcaaacactacaaattcaatcagctaaattattttctataagctataag 27863962  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 16865961 - 16865928
Alignment:
Q  10 taattttattaaacactacaaattcaatcaatta 43  Q
    ||||||||| ||||||||||||||||||||||||    
T  16865961 taattttatcaaacactacaaattcaatcaatta 16865928  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31063126 - 31063163
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatc 38  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  31063126 ttcaaccgctaatcttatcaaacactacaaattcaatc 31063163  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21938066 - 21938114
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatcaattaacttat 49  Q
    |||||||| |||||||| |||||||| ||||||||||||| ||| ||||    
T  21938066 ttcaaccgttaattttactaaacactgcaaattcaatcaactaatttat 21938114  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36514647 - 36514695
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatcaattaacttat 49  Q
    |||||||  ||||||||| ||||||||||||||||||||| || |||||    
T  36514647 ttcaaccattaattttatgaaacactacaaattcaatcaactatcttat 36514695  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2255929 - 2255968
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatcaa 40  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  2255929 ttcaaccactaattttattaaacactacaaattcaatcaa 2255968  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3341307 - 3341349
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatcaatta 43  Q
    |||||||||||||||||| |||||||| ||||| |||||||||    
T  3341307 ttcaaccgctaattttatcaaacactataaattaaatcaatta 3341349  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 724731 - 724767
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaat 37  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  724731 ttcaaccactaattttatcaaacactacaaattcaat 724767  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 17696169 - 17696226
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatcaattaacttatatgctataa 58  Q
    ||||||| ||||||||||||||||||||||||| | |||||||| |||| || |||||    
T  17696169 ttcaaccactaattttattaaacactacaaatttattcaattaatttatttgttataa 17696226  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2111042 - 2111090
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatcaattaacttat 49  Q
    |||||||||||||||||  ||||||| |||||||||||| ||| |||||    
T  2111042 ttcaaccgctaattttaccaaacactgcaaattcaatcagttatcttat 2111090  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 22347328 - 22347289
Alignment:
Q  10 taattttattaaacactacaaattcaatcaattaacttat 49  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  22347328 taattttattaaatactacaaattcaatcagttaacttat 22347289  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 22058003 - 22057970
Alignment:
Q  10 taattttattaaacactacaaattcaatcaatta 43  Q
    |||||||| |||||||||||||||||||||||||    
T  22058003 taattttactaaacactacaaattcaatcaatta 22057970  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 47789410 - 47789362
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatcaattaacttat 49  Q
    |||||||||||||||||  |||||||||||| ||||||| ||| |||||    
T  47789410 ttcaaccgctaattttaccaaacactacaaaatcaatcagttagcttat 47789362  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 32348434 - 32348481
Alignment:
Q  2 tcaaccgctaattttattaaacactacaaattcaatcaattaacttat 49  Q
    ||||||||||||||||  ||||||||||||||||||||| || |||||    
T  32348434 tcaaccgctaattttaccaaacactacaaattcaatcaactagcttat 32348481  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 31117638 - 31117600
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatca 39  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  31117638 ttcaatcgctaattttatcaaacactacaaattcaatca 31117600  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 32602967 - 32603005
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatca 39  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  32602967 ttcaaccactaattttactaaacactacaaattcaatca 32603005  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35272527 - 35272489
Alignment:
Q  1 ttcaaccgctaattttattaaacactacaaattcaatca 39  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  35272527 ttcaaccgataattttactaaacactacaaattcaatca 35272489  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 43024596 - 43024630
Alignment:
Q  3 caaccgctaattttattaaacactacaaattcaat 37  Q
    |||||| ||||||||||||||||||||||||||||    
T  43024596 caaccgttaattttattaaacactacaaattcaat 43024630  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 6462283 - 6462250
Alignment:
Q  6 ccgctaattttattaaacactacaaattcaatca 39  Q
    |||||||||||| |||||||||||||||||||||    
T  6462283 ccgctaattttactaaacactacaaattcaatca 6462250  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 33535387 - 33535420
Alignment:
Q  10 taattttattaaacactacaaattcaatcaatta 43  Q
    ||||||||| ||||||||||||||||||||||||    
T  33535387 taattttatcaaacactacaaattcaatcaatta 33535420  T

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