View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1431_low_23 (Length: 249)
Name: NF1431_low_23
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1431_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 51114948 - 51114710
Alignment:
| Q |
1 |
catgtgatcgttgtgttgaacaatttgaccatcattgtcctattgtatccaattgcattggaaaaaagaacaaacgagatttctttgctcttcttgtttt |
100 |
Q |
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| T |
51114948 |
catgtgatcgttgtgttgaacaatttgaccatcattgtcctattgtatccaattgcattggaaaaaagaacaaacgagatttctttgctcttcttgtttt |
51114849 |
T |
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| Q |
101 |
tgaaacttcagcaatgttggttattggtgtagtttgtctgaagagactaattcatttaccccttccttcttcatttgggattaaatttgttggttcaata |
200 |
Q |
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| T |
51114848 |
agaaacttcagcaatgttggttattggtgtagtttgtctgaagagactaattcatttaccccttccttcttcatttgggattaaatttgttggttcaata |
51114749 |
T |
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| Q |
201 |
tcctttctaattgctgattatatcttcttctggcctatg |
239 |
Q |
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| T |
51114748 |
tcctttctaattgctgattatatcttcttctggcctatg |
51114710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 51105395 - 51105155
Alignment:
| Q |
2 |
atgtgatcgttgtgttgaacaatttgaccatcattgtcctattgtatccaattgcattggaaaaaagaacaaacgagatttctttgctcttcttgttttt |
101 |
Q |
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| T |
51105395 |
atgtgatcaatgtgtggaacaatttgaccatcattgtccttggttgtctagttgcattggcaagaaaaacaaacgagatttctttgcttttcttgtttta |
51105296 |
T |
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| Q |
102 |
gaaacttcagcaatgttggttattggtgtagtttgtctgaagagactaattcatttaccccttccttcttcatttg------ggattaaatttgttggtt |
195 |
Q |
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| T |
51105295 |
gaaacttcagcaatgttggttactggtgtagtttgtctcaagagacttgctcattctcgccgtccttcttcatttggatcatggattaaaattgttggtt |
51105196 |
T |
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| Q |
196 |
caatatcctttctaattgctgattatatcttcttctggcct |
236 |
Q |
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| T |
51105195 |
caatattctttctaattgctgataatttcctcttctggcct |
51105155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 48038553 - 48038613
Alignment:
| Q |
1 |
catgtgatcgttgtgttgaacaatttgaccatcattgtcctattgtatccaattgcattgg |
61 |
Q |
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| T |
48038553 |
catgtgatcgttgtgtggagcaatttgaccatcattgtccttgggtatccaattgcattgg |
48038613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 48039336 - 48039397
Alignment:
| Q |
78 |
gatttctttgctcttcttgtttttgaaacttcagcaatgttggttattggtgtagtttgtct |
139 |
Q |
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| T |
48039336 |
gatttctttgcttttcttattcttgaagtttcagcaatgttggttactggtggagtatgtct |
48039397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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