View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1431_low_26 (Length: 244)
Name: NF1431_low_26
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1431_low_26 |
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| [»] chr7 (4 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 14812360 - 14812603
Alignment:
| Q |
1 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactcttttg |
100 |
Q |
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| T |
14812360 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactcttttg |
14812459 |
T |
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| Q |
101 |
agtttaacagcgagacttctctctatatcttcagatattgttttcccaaacaaaagcctctttgcaaggtgcattttatagtacttatggaacaaatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
14812460 |
agtttaacagcgagacttctctctatatcttcagatattgttttcccaaacaaaagcctctttggaaggtgctttttatagtacttatggaacaaatctt |
14812559 |
T |
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| Q |
201 |
tatcatgcaacaatttgataaacatcatcaccttgtcaagaata |
244 |
Q |
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| T |
14812560 |
tatcatgcaacaatttgataaacatcatcaccttgtcaagaata |
14812603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 15259355 - 15259598
Alignment:
| Q |
1 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactcttttg |
100 |
Q |
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| T |
15259355 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactcttttg |
15259454 |
T |
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| Q |
101 |
agtttaacagcgagacttctctctatatcttcagatattgttttcccaaacaaaagcctctttgcaaggtgcattttatagtacttatggaacaaatctt |
200 |
Q |
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| T |
15259455 |
agtttaacagcgagatttctctctatatcttcagatattgtttttccaaacaaaagcctctttgtaaggtgctttttatagtacttatggaacaaatctt |
15259554 |
T |
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| Q |
201 |
tatcatgcaacaatttgataaacatcatcaccttgtcaagaata |
244 |
Q |
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| T |
15259555 |
tatcatgcaacaatttgataaacatcatcaccttgtcaagaata |
15259598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 14804940 - 14805009
Alignment:
| Q |
1 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaat |
70 |
Q |
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| T |
14804940 |
agcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtatcagcaaccattgtctctaat |
14805009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 15251934 - 15252003
Alignment:
| Q |
1 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaat |
70 |
Q |
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| T |
15251934 |
agcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtatcagcaaccattgtctctaat |
15252003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 17521820 - 17521577
Alignment:
| Q |
1 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactcttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521820 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactcttttg |
17521721 |
T |
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| Q |
101 |
agtttaacagcgagacttctctctatatcttcagatattgttttcccaaacaaaagcctctttgcaaggtgcattttatagtacttatggaacaaatctt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17521720 |
agtttaacagcgagatttctctctatatcttcagatattgttttgccaaacaaaagcctctttgcaaggtgctttttatagtacttatggaacaaatctt |
17521621 |
T |
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| Q |
201 |
tatcatgcaacaatttgataaacatcatcaccttgtcaagaata |
244 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17521620 |
tatcatgcaacaatttgataaacatcaccaccttgtcaagaata |
17521577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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