View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1431_low_27 (Length: 232)

Name: NF1431_low_27
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1431_low_27
NF1431_low_27
[»] chr3 (3 HSPs)
chr3 (15-118)||(25766634-25766737)
chr3 (17-113)||(30053059-30053155)
chr3 (126-186)||(25766778-25766838)
[»] chr7 (5 HSPs)
chr7 (15-118)||(4822630-4822733)
chr7 (122-196)||(4822770-4822844)
chr7 (69-118)||(332943-332992)
chr7 (66-113)||(4427893-4427940)
chr7 (122-180)||(4427793-4427851)
[»] scaffold0011 (2 HSPs)
scaffold0011 (24-118)||(134159-134253)
scaffold0011 (122-198)||(134046-134122)
[»] scaffold1948 (2 HSPs)
scaffold1948 (15-118)||(654-757)
scaffold1948 (122-198)||(794-870)
[»] chr8 (4 HSPs)
chr8 (15-104)||(3597150-3597240)
chr8 (15-118)||(19928266-19928369)
chr8 (23-113)||(22664319-22664409)
chr8 (122-185)||(22664451-22664514)
[»] scaffold0176 (2 HSPs)
scaffold0176 (21-108)||(10394-10481)
scaffold0176 (129-185)||(10535-10591)
[»] scaffold1260 (2 HSPs)
scaffold1260 (24-118)||(1572-1666)
scaffold1260 (122-185)||(1472-1535)
[»] scaffold0607 (2 HSPs)
scaffold0607 (21-113)||(8049-8141)
scaffold0607 (122-180)||(8183-8241)
[»] chr6 (3 HSPs)
chr6 (26-118)||(16878520-16878612)
chr6 (15-99)||(21626295-21626379)
chr6 (122-184)||(16878649-16878711)
[»] scaffold0414 (2 HSPs)
scaffold0414 (21-113)||(5963-6055)
scaffold0414 (122-181)||(5862-5921)
[»] scaffold0249 (1 HSPs)
scaffold0249 (24-118)||(16529-16623)
[»] scaffold0015 (2 HSPs)
scaffold0015 (24-112)||(165076-165164)
scaffold0015 (122-181)||(164974-165033)
[»] scaffold0056 (2 HSPs)
scaffold0056 (17-113)||(33607-33703)
scaffold0056 (122-185)||(33502-33565)
[»] chr1 (1 HSPs)
chr1 (122-180)||(21133782-21133840)
[»] scaffold0007 (1 HSPs)
scaffold0007 (30-99)||(144304-144373)


Alignment Details
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 25766634 - 25766737
Alignment:
15 ttatactcaagcaagagtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgcattcttttgcaaaagctccatttcaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||     
25766634 ttatactcaagcaagagtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgcattcttttgcaacaactccatttcag 25766733  T
115 tgga 118  Q
    ||||    
25766734 tgga 25766737  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 30053155 - 30053059
Alignment:
17 atactcaagcaagagtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgcattcttttgcaaaagctccatttca 113  Q
    ||||| ||||||||||||||||||||  |  ||||||||||||||| ||||||||||||| ||||||| ||||||| |||||||||| |||| ||||    
30053155 atacttaagcaagagtagcttctgatctaacacttcctttctcaatagcttgttctccctctcaagttatgcattcctttgcaaaagttccagttca 30053059  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 25766778 - 25766838
Alignment:
126 aaatctcttggatgcactccagcaggaatgagatctgttggatttctttctcttagacata 186  Q
    ||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||    
25766778 aaatctcttggatgcactccagcaggaatgaaatttgtttgatttctttctcttagacata 25766838  T

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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 4822630 - 4822733
Alignment:
15 ttatactcaagcaagagtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgcattcttttgcaaaagctccatttcaa 114  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||||||||     
4822630 ttatactcaagcaaaagtagcttctgattgagaacttcctttctcaatcgcttgttctccctttcaagttttgcattcctttgcaatagctccatttcag 4822729  T
115 tgga 118  Q
    ||||    
4822730 tgga 4822733  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 4822770 - 4822844
Alignment:
122 atccaaatctcttggatgcactccagcaggaatgagatctgttggatttctttctcttagacataagggagtttg 196  Q
    |||||| |||||||||||||||||| ||||||||| || |||||||||||||||||||||||||| | |||||||    
4822770 atccaattctcttggatgcactccaacaggaatgaaatttgttggatttctttctcttagacataggagagtttg 4822844  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 332943 - 332992
Alignment:
69 ttctccctttcaagttctgcattcttttgcaaaagctccatttcaatgga 118  Q
    |||||||||||||||||||||||| |||||| |||||||| |||| ||||    
332943 ttctccctttcaagttctgcattcctttgcataagctccaattcagtgga 332992  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 4427940 - 4427893
Alignment:
66 ttgttctccctttcaagttctgcattcttttgcaaaagctccatttca 113  Q
    ||||||||||| ||||||||||||||| ||||||  ||||||||||||    
4427940 ttgttctccctctcaagttctgcattcctttgcagcagctccatttca 4427893  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 4427851 - 4427793
Alignment:
122 atccaaatctcttggatgcactccagcaggaatgagatctgttggatttctttctctta 180  Q
    ||||||||| ||||||||||||||  | || |||| |||||||||||||||| ||||||    
4427851 atccaaatcccttggatgcactccttctggtatgaaatctgttggatttcttcctctta 4427793  T

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Target: scaffold0011 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 134253 - 134159
Alignment:
24 agcaagagtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgcattcttttgcaaaagctccatttcaatgga 118  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
134253 agcaagagtagcttctgatctagaacttcctttctcaattgcttgttctccctttcaagttctgcattcctttgcaaaagctccatttcagtgga 134159  T

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Target: scaffold0011; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 134122 - 134046
Alignment:
122 atccaaatctcttggatgcactccagcaggaatgagatctgttggatttctttctcttagacataagggagtttgca 198  Q
    |||||| ||||||||||||||| | || ||||||| |||||||||||||||||||||||||||| | |||| |||||    
134122 atccaattctcttggatgcacttctgctggaatgaaatctgttggatttctttctcttagacatgaaggagattgca 134046  T

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Target: scaffold1948 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold1948
Description:

Target: scaffold1948; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 654 - 757
Alignment:
15 ttatactcaagcaagagtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgcattcttttgcaaaagctccatttcaa 114  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||| ||||| ||||||| |||||||||||||    
654 ttatattcaagcaagagtagcttatgattgagaacttcctttctcagttgcttgttctcccttccaagttctacattcctttgcaatagctccatttcaa 753  T
115 tgga 118  Q
    ||||    
754 tgga 757  T

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Target: scaffold1948; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 794 - 870
Alignment:
122 atccaaatctcttggatgcactccagcaggaatgagatctgttggatttctttctcttagacataagggagtttgca 198  Q
    |||||| ||||||||||| |||||   |||||||| || ||||||||||||||||||||||| ||  ||||||||||    
794 atccaattctcttggatgaactcccataggaatgaaatatgttggatttctttctcttagacttagaggagtttgca 870  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 3597240 - 3597150
Alignment:
15 ttatactcaagcaagagtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgca-ttcttttgcaaaagc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||    
3597240 ttatactcaagcaagagtagcttctgattgagaacttcctttctcaactgcttgttctccctttcaagttctccatttcttttgcaaaagc 3597150  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 19928266 - 19928369
Alignment:
15 ttatactcaagcaagagtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgcattcttttgcaaaagctccatttcaa 114  Q
    ||||| |||||||| |||||||| |||||||||||||||||||||| ||||||| ||||||| ||||||||| ||||| ||||||| ||||||||||||     
19928266 ttatattcaagcaaaagtagcttttgattgagaacttcctttctcagttgcttggtctccctctcaagttcttcattcctttgcaatagctccatttcag 19928365  T
115 tgga 118  Q
    ||||    
19928366 tgga 19928369  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 22664319 - 22664409
Alignment:
23 aagcaagagtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgcattcttttgcaaaagctccatttca 113  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||||| ||||||||||||||| ||||    
22664319 aagcatgagtagcttctgattgagaagttcctttctcagttgcttgttttccctttcaagttctacattcctttgcaaaagctccaattca 22664409  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 22664451 - 22664514
Alignment:
122 atccaaatctcttggatgcactccagcaggaatgagatctgttggatttctttctcttagacat 185  Q
    |||||| |||||||||||||||||  | ||||||| ||||||||||||||||| ||||||||||    
22664451 atccaattctcttggatgcactcctactggaatgaaatctgttggatttctttttcttagacat 22664514  T

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Target: scaffold0176 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 10394 - 10481
Alignment:
21 tcaagcaagagtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgcattcttttgcaaaagctcca 108  Q
    ||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
10394 tcaagcatgagtagcttctaattgagaagttcctttctcagttgcttgttctccctttcaagttctgcattcctttgcaaaagctcca 10481  T

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Target: scaffold0176; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 10535 - 10591
Alignment:
129 tctcttggatgcactccagcaggaatgagatctgttggatttctttctcttagacat 185  Q
    |||||||||||||||||  | ||||||| |||| |||||||||||||||||||||||    
10535 tctcttggatgcactcctactggaatgaaatctattggatttctttctcttagacat 10591  T

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Target: scaffold1260 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: scaffold1260
Description:

Target: scaffold1260; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 1666 - 1572
Alignment:
24 agcaagagtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgcattcttttgcaaaagctccatttcaatgga 118  Q
    |||||||||||||||||||  | |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
1666 agcaagagtagcttctgatctaaaacttcctttatcaattgcttgttctccctttcaagttcttcattcctttgcaaaagctccatttcagtgga 1572  T

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Target: scaffold1260; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 1535 - 1472
Alignment:
122 atccaaatctcttggatgcactccagcaggaatgagatctgttggatttctttctcttagacat 185  Q
    |||||| ||||||||||||||||| || ||||||| |||| |||||||||||||||||||||||    
1535 atccaattctcttggatgcactcctgctggaatgaaatctattggatttctttctcttagacat 1472  T

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Target: scaffold0607 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 8049 - 8141
Alignment:
21 tcaagcaagagtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgcattcttttgcaaaagctccatttca 113  Q
    ||||||| |||||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||| ||| ||||||||||| ||||    
8049 tcaagcatgagtagcttctgattgagaagttcctttctcaactgcttgttccctctttcaagttctgcattcctttccaaaagctccaattca 8141  T

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Target: scaffold0607; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 8183 - 8241
Alignment:
122 atccaaatctcttggatgcactccagcaggaatgagatctgttggatttctttctctta 180  Q
    ||||||||||||||||||||||||  | ||||||| ||||||| |||||||||||||||    
8183 atccaaatctcttggatgcactcctactggaatgaaatctgttcgatttctttctctta 8241  T

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Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 16878520 - 16878612
Alignment:
26 caagagtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgcattcttttgcaaaagctccatttcaatgga 118  Q
    |||||||||||||||||  |||||||||||||| || || ||||||||||||||||||||||||||| ||||||||| |||||||||| ||||    
16878520 caagagtagcttctgatctagaacttcctttcttaaatgtttgttctccctttcaagttctgcattcctttgcaaaaactccatttcagtgga 16878612  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 21626295 - 21626379
Alignment:
15 ttatactcaagcaagagtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgcattcttttgca 99  Q
    |||||||||||||| ||||| ||||| |  |||||||||||||| |  | |||||| ||| ||||||||||||||||| ||||||    
21626295 ttatactcaagcaatagtaggttctgttcaagaacttcctttcttagcttcttgttttccttttcaagttctgcattcctttgca 21626379  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 16878649 - 16878711
Alignment:
122 atccaaatctcttggatgcactccagcaggaatgagatctgttggatttctttctcttagaca 184  Q
    |||||| |||||||||||||||||    ||||||| |||||||||||||| ||||||||||||    
16878649 atccaattctcttggatgcactcctattggaatgaaatctgttggatttccttctcttagaca 16878711  T

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Target: scaffold0414 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 6055 - 5963
Alignment:
21 tcaagcaagagtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgcattcttttgcaaaagctccatttca 113  Q
    ||||||| ||||||||||||| |||||| |||||||||||  |||||||| |||||||||||||||| |||| ||||||||||||||| ||||    
6055 tcaagcatgagtagcttctgaatgagaagttcctttctcagctgcttgttttccctttcaagttctgtattcctttgcaaaagctccaattca 5963  T

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Target: scaffold0414; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 5921 - 5862
Alignment:
122 atccaaatctcttggatgcactccagcaggaatgagatctgttggatttctttctcttag 181  Q
    |||||| || ||||||||||||||  | ||||||| ||||||||||||||||||||||||    
5921 atccaattcccttggatgcactcctactggaatgaaatctgttggatttctttctcttag 5862  T

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Target: scaffold0249 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 16623 - 16529
Alignment:
24 agcaagagtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgcattcttttgcaaaagctccatttcaatgga 118  Q
    |||||||||||||||||||  |  ||||||||||||| ||||||||| ||||||||||||| ||||||| |||||||||| |||| |||| ||||    
16623 agcaagagtagcttctgatctaacacttcctttctcagttgcttgttatccctttcaagttatgcattcctttgcaaaagttccaattcagtgga 16529  T

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Target: scaffold0015 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 165164 - 165076
Alignment:
24 agcaagagtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgcattcttttgcaaaagctccatttc 112  Q
    |||||||| | ||||||||  |||| ||||||| |||| ||||| || ||||||||||||||||||||| |||||| |||||| |||||    
165164 agcaagagcatcttctgatgtagaagttcctttttcaactgcttcttttccctttcaagttctgcattcctttgcagaagctctatttc 165076  T

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Target: scaffold0015; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 165033 - 164974
Alignment:
122 atccaaatctcttggatgcactccagcaggaatgagatctgttggatttctttctcttag 181  Q
    |||||| ||||||||||||||||   | ||||||| |||||| |||||||||||||||||    
165033 atccaattctcttggatgcactcttactggaatgaaatctgtgggatttctttctcttag 164974  T

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Target: scaffold0056 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 33703 - 33607
Alignment:
17 atactcaagcaagagtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgcattcttttgcaaaagctccatttca 113  Q
    ||||| ||||||||||||||||||||  |  ||||| ||||| ||   |||||||||||| ||||||||||||||| |||||| ||| |||| ||||    
33703 atacttaagcaagagtagcttctgatctaacacttcttttcttaaagacttgttctccctctcaagttctgcattcctttgcagaagttccagttca 33607  T

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Target: scaffold0056; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 33565 - 33502
Alignment:
122 atccaaatctcttggatgcactccagcaggaatgagatctgttggatttctttctcttagacat 185  Q
    ||||||||| ||||||||||||||  | ||||||| ||| |||||||||||| |||||||||||    
33565 atccaaatcccttggatgcactccttctggaatgaaatcagttggatttcttcctcttagacat 33502  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 21133840 - 21133782
Alignment:
122 atccaaatctcttggatgcactccagcaggaatgagatctgttggatttctttctctta 180  Q
    ||||||||| ||||||||||||||  | ||||||| |||||||||||||||| ||||||    
21133840 atccaaatcccttggatgcactccttctggaatgaaatctgttggatttcttcctctta 21133782  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 144304 - 144373
Alignment:
30 agtagcttctgattgagaacttcctttctcaattgcttgttctccctttcaagttctgcattcttttgca 99  Q
    ||||||||||| |  |||||||||||||| |  | |||||| ||| ||||||||||||||||||||||||    
144304 agtagcttctgttcaagaacttcctttctaagcttcttgttttccttttcaagttctgcattcttttgca 144373  T

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