View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1431_low_28 (Length: 232)
Name: NF1431_low_28
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1431_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 53235039 - 53235238
Alignment:
| Q |
20 |
aacagtaaaacaaaagggatctatctttgattctttttacaaacttactggaaagttggtagtggtcgttggaccccagtacttgagagcagcaagatca |
119 |
Q |
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| T |
53235039 |
aacagtaaaataaaagggatctatctttgattctttttacaaacttactggaaagttggtagtggtcgttggaccccagtacttgagagcagcaagatca |
53235138 |
T |
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| Q |
120 |
taagctctagctgctttctcttccttatcatagccacctaaattataacnnnnnnnnnnnntttcattttatgagctaaatgattaattaacactgagta |
219 |
Q |
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| T |
53235139 |
taagctctagctgctttctcttccttatcatagccacctaaattataacaaaaaacaaaaatttcattttatgagctaaatgattaattaacactgagta |
53235238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 24562620 - 24562716
Alignment:
| Q |
62 |
acttactggaaagttggtagtggtcgttggaccccagtacttgagagcagcaagatcataagctctagctgctttctcttccttatcatagccacct |
158 |
Q |
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| T |
24562620 |
acttactggaaagttggtagtggtggatgtcccccagtacttaagtgcagctaaatcataagacctagcagctttctcttctttatcatatccacct |
24562716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 40190075 - 40190007
Alignment:
| Q |
93 |
ccccagtacttgagagcagcaagatcataagctctagctgctttctcttccttatcatagccacctaaa |
161 |
Q |
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| T |
40190075 |
ccccaatacttgagtgctgcttgatcataagctctagcagctttttcttccatatcataaccacctaaa |
40190007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 4846642 - 4846707
Alignment:
| Q |
93 |
ccccagtacttgagagcagcaagatcataagctctagctgctttctcttccttatcatagccacct |
158 |
Q |
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| T |
4846642 |
ccccaatatttgagagcagcaagatcataagctcttgcagctttctcttccatatcataaccacct |
4846707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 159
Target Start/End: Original strand, 41964856 - 41964955
Alignment:
| Q |
60 |
aaacttactggaaagttggtagtggtcgttggaccccagtacttgagagcagcaagatcataagctctagctgctttctcttccttatcatagccaccta |
159 |
Q |
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| T |
41964856 |
aaacttacgggaaagtttgtagtggtagatgtcccccagtattttagtgctgctaaatcataagccctagctgctttctcttctttgtcatacccaccta |
41964955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 7210957 - 7210884
Alignment:
| Q |
87 |
gttggaccccagtacttgagagcagcaagatcataagctctagctgctttctcttccttatcatagccacctaa |
160 |
Q |
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| T |
7210957 |
gttggaccccaatacttcagtgcagctaagtcataagcctttgctgctttttcttccttatcatacccacctaa |
7210884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 47753488 - 47753423
Alignment:
| Q |
93 |
ccccagtacttgagagcagcaagatcataagctctagctgctttctcttccttatcatagccacct |
158 |
Q |
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| T |
47753488 |
ccccaatacttaagagctgcttgatcataagctcttgcagctttctcttccatatcataaccacct |
47753423 |
T |
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