View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1431_low_3 (Length: 461)
Name: NF1431_low_3
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1431_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 446
Target Start/End: Original strand, 13922818 - 13923255
Alignment:
| Q |
14 |
ttagttgcctagaaaaagataagaggaaaaatctatatattttttagtttaccctaaacggaaaaagnnnnnnnn-gttacatagagaggggataaaacc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |
|
|
| T |
13922818 |
ttagttgcctagaaaaagataagaggaaaaatctatatattttttagtttaccctaaactgaaaaagtttttttttgttacaaagagaggggataaaacc |
13922917 |
T |
|
| Q |
113 |
aaatgaaaaaatctttttgagcgaagaagacccctatgacatttaccaaagagaattaatga-----attgaggattaattctcgtatctataagnnnnn |
207 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| | | | |||||||||||||||||||||||| |
|
|
| T |
13922918 |
aaatgaaagaatctttttgagcgaagaagactcctatgacatttaccaaagagaattaataaggattaataaggattaattctcgtatctataagaaaaa |
13923017 |
T |
|
| Q |
208 |
nnnttaaattatggtgatcatatcggcctcaagtctacggcaccacctttttgagatattatccgctttaaatcttgtgtgttagcccttggagttttgt |
307 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13923018 |
aa-ttaaattatggtcattgtatcggcctcaagtctacgacaccacctttttgagatattatccgctttaaatcttgtgtgttagcccttggagttttgt |
13923116 |
T |
|
| Q |
308 |
cctttgtcaaaagacattttgttgggttaagaagtgtgtgttgtttataacatttggtctcgattagtaagtaattaagggcttttatgtataattatcc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
13923117 |
cctttgtcaaaagacattttgttgggttaagaagtgtgtgttgtttataacatttggtctcgattagtaagcaattaaggacttttatgtataattatcc |
13923216 |
T |
|
| Q |
408 |
ggtcgatcgaggttaagtgatttaagttgtaagtcatta |
446 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13923217 |
ggtcgatcgaggttaagggatttaagttgtaagtcatta |
13923255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University