View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1431_low_4 (Length: 459)
Name: NF1431_low_4
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1431_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 24 - 443
Target Start/End: Complemental strand, 7652020 - 7651613
Alignment:
| Q |
24 |
gtaaaagcatcatcctctttaggcaaattgaacttaacacctttcatatttggattttgatttggtggtggcatcatcatgttcatgtccttgaattgag |
123 |
Q |
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| T |
7652020 |
gtaaaagcatcatcctctttaggcaaattgaccttaacacctttcatatttggattttgatttggtggtggcatcatcatgttcatgtccttgaattgag |
7651921 |
T |
|
| Q |
124 |
gccccttaagatcttcaagtcctttcatctgctgaagttgttgcaactgttgttgaagctgttgttgaggattctgctcttgttgtccacctccctttgg |
223 |
Q |
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| T |
7651920 |
tccccttaagatcttcaagtcctttcatctgctgaagttgttg------------aagctgttgttgaggattctgctcttgttgtccacctccctttgg |
7651833 |
T |
|
| Q |
224 |
ttggttttggttatttataggatccttttgcccattgttgttattgttttctccaccaccttttccagtgtcaatttgaatgttcttcatctggtttgcc |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7651832 |
ttggttttggttatttataggatccttttgcccattgttgttattgttttctccaccaccttttccagtgtcaatttgaatgttcttcatctggtttgcc |
7651733 |
T |
|
| Q |
324 |
atgttgttatggttgttattgttgttgttctccgttggagcacaccaaagttctgcatgtttctttgattttgcaagcttcttaatgagaacatctgggt |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7651732 |
atgttgttatggttgttattgttgttgttctccgttggagcacaccaaagttctgcatgtttctttgattttgcaagcttcttgatgagaacatctgggt |
7651633 |
T |
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| Q |
424 |
ctatattcccagcaacaatc |
443 |
Q |
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| T |
7651632 |
ctatattcccagcaacaatc |
7651613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 26 - 424
Target Start/End: Complemental strand, 7657419 - 7657009
Alignment:
| Q |
26 |
aaaagcatcatcctctttaggcaaattgaacttaacacctttcatatttggattttgatttggtggtggcatcatcatgttcatgtccttgaattgaggc |
125 |
Q |
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|||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7657419 |
aaaatcatcatactcttcaggcaaattgaacttaacacctttcatatttgtattttgatttggtggtggcattttcatgttcatgtccttgaattgaggc |
7657320 |
T |
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| Q |
126 |
cccttaagatcttcaagtcctttcatctgctgaagttgttgcaactgttgt---------tgaagctg---ttgttgaggattctgctcttgttgtccac |
213 |
Q |
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| T |
7657319 |
accttcagatctccaaatcctttaatatgttgaagttgttgcagctgttgtaactgttgctgaagctgctgttgttgaggattttgtccttgttggctac |
7657220 |
T |
|
| Q |
214 |
ctccctttggttggttttggttatttataggatccttttgcccattgttgttattgttttctccaccaccttttccagtgtcaatttgaatgttcttcat |
313 |
Q |
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| T |
7657219 |
caccctttggctgattttggttatttccaggacccttttgccccttgttgttattgtttcctccaccaccttttccattgtcaatatgcatgttcttcat |
7657120 |
T |
|
| Q |
314 |
ctggtttgccatgttgttatggttgttattgttgttgttctccgttggagcacaccaaagttctgcatgtttctttgattttgcaagcttcttaatgaga |
413 |
Q |
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|| |||| |||||||| |||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
7657119 |
ttgatttggaatgttgttctggttgttattgttgttgtttgcctttggagcaccccaaagttctgcatgtttccctgattttgcaagcttcttgatgaga |
7657020 |
T |
|
| Q |
414 |
acatctgggtc |
424 |
Q |
| |
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|||| |||||| |
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| T |
7657019 |
acatttgggtc |
7657009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 48539049 - 48539089
Alignment:
| Q |
144 |
cctttcatctgctgaagttgttgcaactgttgttgaagctg |
184 |
Q |
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| T |
48539049 |
cctttcatctgttgaagttgttgtaactgttgttgaagctg |
48539089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 48573304 - 48573344
Alignment:
| Q |
144 |
cctttcatctgctgaagttgttgcaactgttgttgaagctg |
184 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
48573304 |
cctttcatctgttgaagttgttgtaactgttgttgaagctg |
48573344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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