View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1431_low_5 (Length: 435)
Name: NF1431_low_5
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1431_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 105 - 416
Target Start/End: Complemental strand, 37308734 - 37308423
Alignment:
| Q |
105 |
caaataagctaatcaaatctcactgctcctagtcactttagtgaacctaaaaatttcttgaggagaattaattcctgcaacaataggcttcaccttctca |
204 |
Q |
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| T |
37308734 |
caaataagctaatcaaatctcactgctcctagtcactttagtgaacctaaaaatttcttgaggagaattaattcctgcaacaataggcttcaccttctca |
37308635 |
T |
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| Q |
205 |
aagcacttgatgataatcaaaaacataattctataaaccaaagccattcgaaccaaaatagcaaaatccacccactttgagtaacttgtttccatttgcc |
304 |
Q |
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| T |
37308634 |
aagcacttgatgataatcaaaaacataattctataaaccaaagccattcgaaccaaaatagcaaaatccacctactttgagtaacttgtttccatttgcc |
37308535 |
T |
|
| Q |
305 |
acaagtgtctcaatatgtcatcaccactagtcacttgattgctaatagcgaatgttaaaccttgaaactcatttttgaacaatccttgatatgcatattt |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37308534 |
acaagtgtctcaatatgtcatcaccactagtcacttgattgctaatagcgaatgttaaaccttgaaactcatttttgaacaatccttgatatgcatattt |
37308435 |
T |
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| Q |
405 |
gtgaaaggaaat |
416 |
Q |
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|||||||||||| |
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| T |
37308434 |
gtgaaaggaaat |
37308423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 37308847 - 37308767
Alignment:
| Q |
24 |
agcttatgtgagttaattttaagaatttcagcatcttgtgaatttcagattcatttgtaattttagcatgcctcagcaaca |
104 |
Q |
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| T |
37308847 |
agcttatgtgagttaattttaagaatttcagcatcttgtgaatttcagattcatttgtaattttagcatgcctcagcaaca |
37308767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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