View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1431_low_7 (Length: 408)

Name: NF1431_low_7
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1431_low_7
NF1431_low_7
[»] chr2 (24 HSPs)
chr2 (12-185)||(16440003-16440176)
chr2 (255-393)||(16439793-16439933)
chr2 (12-147)||(19012696-19012831)
chr2 (26-147)||(19124027-19124148)
chr2 (13-112)||(24371128-24371225)
chr2 (23-112)||(24322099-24322187)
chr2 (31-118)||(30948960-30949046)
chr2 (27-112)||(20852429-20852513)
chr2 (86-144)||(22328764-22328822)
chr2 (12-74)||(23256705-23256767)
chr2 (86-144)||(41653370-41653428)
chr2 (86-145)||(23698566-23698625)
chr2 (12-125)||(25858274-25858385)
chr2 (86-126)||(24366062-24366102)
chr2 (33-112)||(21511645-21511722)
chr2 (22-101)||(23704591-23704669)
chr2 (12-61)||(22328845-22328894)
chr2 (33-112)||(21516124-21516201)
chr2 (23-61)||(23340918-23340956)
chr2 (23-101)||(24177392-24177469)
chr2 (12-50)||(24366005-24366043)
chr2 (23-61)||(32140323-32140361)
chr2 (12-61)||(29563545-29563594)
chr2 (12-61)||(41653298-41653347)
[»] chr8 (17 HSPs)
chr8 (12-147)||(26854339-26854474)
chr8 (31-147)||(14161839-14161954)
chr8 (13-147)||(19791914-19792048)
chr8 (12-118)||(24967553-24967658)
chr8 (27-147)||(21319693-21319812)
chr8 (12-112)||(24221238-24221337)
chr8 (12-112)||(29003937-29004036)
chr8 (12-147)||(23193625-23193758)
chr8 (27-112)||(22904900-22904984)
chr8 (23-61)||(6280102-6280140)
chr8 (12-61)||(1990175-1990224)
chr8 (12-61)||(21140021-21140070)
chr8 (23-67)||(26013280-26013324)
chr8 (26-61)||(9318190-9318225)
chr8 (26-61)||(16418136-16418171)
chr8 (26-61)||(23779768-23779803)
chr8 (26-82)||(23455913-23455969)
[»] chr6 (54 HSPs)
chr6 (12-147)||(23523629-23523764)
chr6 (12-145)||(25923068-25923201)
chr6 (12-147)||(25030900-25031035)
chr6 (12-147)||(19612420-19612555)
chr6 (7-147)||(26822124-26822264)
chr6 (12-147)||(23510081-23510216)
chr6 (12-145)||(19993868-19994000)
chr6 (13-118)||(28721008-28721113)
chr6 (12-147)||(18627699-18627834)
chr6 (12-147)||(28733822-28733956)
chr6 (29-147)||(12660143-12660260)
chr6 (7-145)||(25338914-25339052)
chr6 (12-112)||(3923941-3924041)
chr6 (12-112)||(20221490-20221589)
chr6 (12-112)||(22115474-22115573)
chr6 (26-112)||(17793675-17793760)
chr6 (10-112)||(24392576-24392677)
chr6 (23-147)||(16470243-16470366)
chr6 (10-109)||(18973963-18974061)
chr6 (12-74)||(14893772-14893834)
chr6 (23-145)||(25507861-25507981)
chr6 (23-145)||(26138933-26139054)
chr6 (12-125)||(20435534-20435645)
chr6 (86-145)||(20218231-20218290)
chr6 (86-145)||(22112256-22112315)
chr6 (86-145)||(26018230-26018289)
chr6 (26-112)||(31965213-31965297)
chr6 (12-61)||(4741337-4741386)
chr6 (12-112)||(20225387-20225484)
chr6 (12-112)||(22119371-22119468)
chr6 (23-112)||(29682910-29682997)
chr6 (10-101)||(15172538-15172628)
chr6 (86-125)||(20439242-20439281)
chr6 (28-99)||(20464690-20464760)
chr6 (86-145)||(24545379-24545438)
chr6 (86-145)||(26157603-26157662)
chr6 (31-101)||(15162526-15162595)
chr6 (12-61)||(29254337-29254386)
chr6 (23-83)||(14991972-14992032)
chr6 (86-145)||(29254255-29254314)
chr6 (23-77)||(5399564-5399618)
chr6 (23-61)||(19695764-19695802)
chr6 (27-61)||(20439304-20439338)
chr6 (7-61)||(24545302-24545356)
chr6 (23-61)||(25968915-25968953)
chr6 (23-61)||(26018312-26018350)
chr6 (23-61)||(26157685-26157723)
chr6 (12-61)||(5949377-5949426)
chr6 (28-61)||(15154033-15154066)
chr6 (28-61)||(15158491-15158524)
chr6 (26-67)||(17743833-17743874)
chr6 (12-61)||(25964268-25964317)
chr6 (12-61)||(26474303-26474352)
chr6 (13-61)||(18993514-18993562)
[»] chr5 (21 HSPs)
chr5 (12-147)||(12410794-12410929)
chr5 (12-138)||(2953067-2953193)
chr5 (12-138)||(16677355-16677481)
chr5 (7-147)||(22171054-22171194)
chr5 (10-112)||(24166565-24166666)
chr5 (12-112)||(23029255-23029353)
chr5 (12-112)||(24165557-24165656)
chr5 (12-90)||(31414806-31414884)
chr5 (71-145)||(20738625-20738699)
chr5 (32-112)||(19222215-19222293)
chr5 (12-61)||(31757822-31757871)
chr5 (12-61)||(34222818-34222867)
chr5 (26-61)||(6406619-6406654)
chr5 (98-145)||(31757886-31757933)
chr5 (12-58)||(20738699-20738745)
chr5 (23-61)||(21382631-21382669)
chr5 (23-61)||(21833280-21833318)
chr5 (12-61)||(23435677-23435726)
chr5 (12-61)||(23447044-23447093)
chr5 (86-118)||(19890040-19890072)
chr5 (12-112)||(23114561-23114659)
[»] chr1 (20 HSPs)
chr1 (10-147)||(12059461-12059598)
chr1 (31-147)||(13799142-13799257)
chr1 (26-147)||(16148146-16148267)
chr1 (27-124)||(16384655-16384751)
chr1 (12-83)||(21240394-21240465)
chr1 (23-118)||(22411407-22411501)
chr1 (12-118)||(16354383-16354488)
chr1 (23-83)||(20860391-20860451)
chr1 (12-109)||(26194541-26194632)
chr1 (32-112)||(2130250-2130328)
chr1 (86-147)||(28763632-28763693)
chr1 (32-112)||(15421401-15421479)
chr1 (27-98)||(23299206-23299276)
chr1 (27-101)||(20898353-20898426)
chr1 (27-96)||(20497876-20497944)
chr1 (32-112)||(16527360-16527438)
chr1 (27-99)||(20448724-20448795)
chr1 (27-99)||(20534490-20534561)
chr1 (10-77)||(30818868-30818935)
chr1 (26-61)||(38045688-38045723)
[»] chr4 (19 HSPs)
chr4 (23-147)||(38652425-38652549)
chr4 (23-133)||(8562015-8562125)
chr4 (12-145)||(9192507-9192640)
chr4 (23-118)||(12807878-12807972)
chr4 (26-111)||(33330710-33330794)
chr4 (12-112)||(17169090-17169188)
chr4 (12-112)||(17174650-17174748)
chr4 (12-112)||(25190488-25190587)
chr4 (12-147)||(3771877-3772010)
chr4 (12-125)||(5675760-5675872)
chr4 (32-112)||(55268076-55268154)
chr4 (32-112)||(4743086-4743164)
chr4 (32-112)||(24493247-24493325)
chr4 (27-99)||(12345658-12345729)
chr4 (26-101)||(11902326-11902400)
chr4 (12-61)||(39423-39472)
chr4 (26-67)||(11048655-11048696)
chr4 (86-126)||(39495-39535)
chr4 (32-112)||(17465142-17465220)
[»] scaffold0011 (1 HSPs)
scaffold0011 (26-147)||(173009-173130)
[»] chr3 (35 HSPs)
chr3 (28-145)||(7908794-7908911)
chr3 (23-147)||(13070042-13070165)
chr3 (12-147)||(13418657-13418793)
chr3 (30-146)||(42244252-42244367)
chr3 (12-147)||(8685531-8685664)
chr3 (13-110)||(17775090-17775186)
chr3 (13-110)||(19076391-19076487)
chr3 (12-118)||(10850404-10850509)
chr3 (23-108)||(17023547-17023631)
chr3 (86-145)||(17041992-17042051)
chr3 (86-145)||(22039116-22039175)
chr3 (23-101)||(11577447-11577524)
chr3 (86-143)||(17051007-17051064)
chr3 (12-117)||(27992175-27992278)
chr3 (12-118)||(6237158-6237263)
chr3 (23-118)||(1993749-1993843)
chr3 (23-118)||(1998908-1999002)
chr3 (86-145)||(17209856-17209915)
chr3 (23-61)||(11399234-11399272)
chr3 (12-61)||(17051087-17051136)
chr3 (12-61)||(22039195-22039244)
chr3 (26-61)||(15234009-15234044)
chr3 (26-61)||(16034428-16034463)
chr3 (26-61)||(17732944-17732979)
chr3 (26-61)||(19566696-19566731)
chr3 (26-101)||(40846791-40846865)
chr3 (22-61)||(43496553-43496592)
chr3 (23-61)||(3280189-3280227)
chr3 (23-61)||(13605393-13605431)
chr3 (23-61)||(14137450-14137488)
chr3 (89-147)||(20224992-20225050)
chr3 (23-61)||(25055372-25055410)
chr3 (23-61)||(36079418-36079456)
chr3 (12-105)||(9762312-9762403)
chr3 (12-61)||(9774767-9774816)
[»] scaffold0001 (4 HSPs)
scaffold0001 (12-147)||(521019-521154)
scaffold0001 (27-112)||(33180-33264)
scaffold0001 (27-112)||(38487-38571)
scaffold0001 (23-83)||(82304-82364)
[»] scaffold0098 (2 HSPs)
scaffold0098 (12-138)||(4493-4619)
scaffold0098 (23-61)||(44007-44045)
[»] chr7 (33 HSPs)
chr7 (12-147)||(4256299-4256434)
chr7 (12-136)||(4541447-4541570)
chr7 (12-112)||(4982834-4982933)
chr7 (12-118)||(11997023-11997128)
chr7 (12-145)||(21005210-21005341)
chr7 (12-112)||(38877708-38877806)
chr7 (13-112)||(679182-679279)
chr7 (26-112)||(15523331-15523415)
chr7 (12-118)||(39389033-39389138)
chr7 (27-112)||(4465486-4465570)
chr7 (32-112)||(1864605-1864683)
chr7 (27-77)||(12348309-12348359)
chr7 (23-109)||(17911891-17911976)
chr7 (23-101)||(30063659-30063736)
chr7 (23-135)||(48713728-48713839)
chr7 (10-61)||(9193700-9193751)
chr7 (10-61)||(9562288-9562339)
chr7 (263-341)||(14310674-14310753)
chr7 (12-61)||(6257210-6257259)
chr7 (12-61)||(8786972-8787021)
chr7 (12-61)||(8836920-8836969)
chr7 (12-61)||(19515049-19515098)
chr7 (12-61)||(33610073-33610122)
chr7 (32-112)||(14925818-14925896)
chr7 (32-112)||(15349284-15349362)
chr7 (23-147)||(39271426-39271548)
chr7 (26-61)||(16076524-16076559)
chr7 (86-117)||(19515121-19515152)
chr7 (23-77)||(1614252-1614306)
chr7 (91-145)||(6257287-6257341)
chr7 (23-77)||(16896960-16897014)
chr7 (12-61)||(4091054-4091103)
chr7 (12-52)||(2307220-2307260)
[»] scaffold0074 (2 HSPs)
scaffold0074 (10-112)||(22421-22522)
scaffold0074 (13-112)||(53923-54021)
[»] scaffold0855 (1 HSPs)
scaffold0855 (12-112)||(3772-3870)
[»] scaffold0847 (1 HSPs)
scaffold0847 (12-112)||(3937-4035)
[»] scaffold0123 (1 HSPs)
scaffold0123 (26-112)||(14396-14481)
[»] scaffold0264 (1 HSPs)
scaffold0264 (12-145)||(22109-22240)
[»] scaffold0014 (1 HSPs)
scaffold0014 (14-105)||(168503-168592)
[»] scaffold0713 (2 HSPs)
scaffold0713 (86-145)||(6463-6522)
scaffold0713 (23-61)||(6402-6440)
[»] scaffold0362 (2 HSPs)
scaffold0362 (12-61)||(8907-8956)
scaffold0362 (86-126)||(8979-9019)
[»] scaffold0049 (1 HSPs)
scaffold0049 (23-61)||(14311-14349)
[»] scaffold0773 (1 HSPs)
scaffold0773 (23-67)||(1464-1508)
[»] scaffold0278 (1 HSPs)
scaffold0278 (23-61)||(12239-12277)
[»] scaffold0197 (1 HSPs)
scaffold0197 (23-61)||(8524-8562)
[»] scaffold1092 (1 HSPs)
scaffold1092 (86-135)||(1440-1489)
[»] scaffold1058 (1 HSPs)
scaffold1058 (86-135)||(2817-2866)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 16440176 - 16440003
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  16440176 tattctaatgtttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttcttttgatgcttcgctttgatattcgtgatgatgaattaaca 16440077  T
Q  112 aatactagccctccgttgtcgctttataagtttgatgcaggagtttttattgacgattgccacttcgtctattt 185  Q
    | |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||  |||||||    
T  16440076 agtactagccatccgttgtcgctttataaatttgatgcaggagttttcattgacgattgccactttatctattt 16440003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 255 - 393
Target Start/End: Complemental strand, 16439933 - 16439793
Alignment:
Q  255 cgaacttcatgaatttttaaggctaaaaacatatataaccaattcctcatatacgtataattactcattgaag--ttcataatccgcacccccgacctcc 352  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||  ||||||||||||||||||||||||     
T  16439933 cgaacttaatgaatttttagggctaaaaacatatataaccaattccttatatacgtataagtactcattgaagttttcataatccgcacccccgacctca 16439834  T
Q  353 tggatacaccagaacttctcaacaattgttactaaagtatt 393  Q
    ||||||| |||||||||||||||||||| ||||||||||||    
T  16439833 tggatacgccagaacttctcaacaattggtactaaagtatt 16439793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 19012696 - 19012831
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||    
T  19012696 tattctcatgtttcacaatccttgtctaatttcacttgttccaatatcaatacttcttctttcgatgcctcgctttgatatttgtgattatcaattaaca 19012795  T
Q  112 aatactagccctccgttgtcgctttataagtttgat 147  Q
    | ||||| ||||||| |||||| |||| | ||||||    
T  19012796 agtactaaccctccgctgtcgcattatgaatttgat 19012831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 19124027 - 19124148
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccctcc 125  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||  |||||||||| |  |||||||||||||| ||||| ||||||    
T  19124027 gcaatccttgtctaatttcacttgttccaatatcaaaacttcttctttcgatgcttcactttgatatttattgtgatgaattaacaagtactaaccctcc 19124126  T
Q  126 gttgtcgctttataagtttgat 147  Q
    |||||||| |||| ||||||||    
T  19124127 gttgtcgcattatgagtttgat 19124148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 24371128 - 24371225
Alignment:
Q  13 attctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    ||||| ||| |||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| |||||  |||||||||||||||||||| ||||||    
T  24371128 attctcatgtttcgcaatccttgtctaatttcacttgttccaatatcaa-acttcatctttcgatccttcg-cttgatatttgtgatgatgaaataacaa 24371225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 24322187 - 24322099
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||||||||||||||||||||||| ||| |||||||| ||||| |||||||||  ||||  |||||||||||||| ||||||||||||    
T  24322187 ttcgcaatccttgtctaatttcacttattccaatatcaaaacttcatctttcgatcattcg-cttgatatttgtgattatgaattaacaa 24322099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 30948960 - 30949046
Alignment:
Q  31 ccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatacta 118  Q
    |||||||||||||||||||||| ||||| || ||||| ||||||||| |||||  || |||||||||||||||||||||||| |||||    
T  30948960 ccttgtctaatttcacttgttccaatattaaaacttcatctttcgatccttcg-cttaatatttgtgatgatgaattaacaattacta 30949046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 20852513 - 20852429
Alignment:
Q  27 caatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||||||||||||||||||| ||| |||||||| ||||| ||||||||| ||||   |||||||||||||| ||||||||||||    
T  20852513 caatccttgtctaatttcacttcttccaatatcaaaacttcatctttcgatccttc-acttgatatttgtgattatgaattaacaa 20852429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 22328822 - 22328764
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccgttgtcgctttataagttt 144  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||| || ||||||||||    
T  22328822 ttgatatttgtgatgataaattaacaaatactaaccctccgttgttgcattataagttt 22328764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 23256705 - 23256767
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttc 74  Q
    |||||| ||| |||||||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  23256705 tattctcatgtttcgcaatccttgtctaatttcacttgttccaatatcaaaacttcatctttc 23256767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 41653370 - 41653428
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccgttgtcgctttataagttt 144  Q
    ||||||||||||||||||||||||||||||||| ||||||||  ||||||||| |||||    
T  41653370 ttgatatttgtgatgatgaattaacaaatactaaccctccgtgctcgctttatgagttt 41653428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 23698566 - 23698625
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccgttgtcgctttataagtttg 145  Q
    |||||||||| |||||||||||||||||||||| ||||||||  ||||||||| ||||||    
T  23698566 ttgatatttgagatgatgaattaacaaatactaaccctccgtgttcgctttatgagtttg 23698625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 25858274 - 25858385
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| || ||||||||||||||||||||||||||| |||||||| |  ||  |||||| |   | |  ||||||||||||||||||||||||||    
T  25858274 tattctcatgttttgcaatccttgtctaatttcacttgttccaatatcaa-aggtccgctttcgctttat-gaattgatatttgtgatgatgaattaaca 25858371  T
Q  112 aatactagccctcc 125  Q
    ||||||| ||||||    
T  25858372 aatactaaccctcc 25858385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 24366062 - 24366102
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccg 126  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  24366062 ttgatatttgtgatgatgaattaacaaatactaaccctccg 24366102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 21511645 - 21511722
Alignment:
Q  33 ttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    ||||||||||||| |||||| |||||||| ||||| |||||||||  |||| ||||||||||| ||||||||| ||||||    
T  21511645 ttgtctaatttcatttgttccaatatcaa-acttcatctttcgatcattcg-tttgatatttgagatgatgaaataacaa 21511722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 23704669 - 23704591
Alignment:
Q  22 cttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatga 101  Q
    ||||||||||||||||||  ||||||||||| ||||| || ||||| ||||||||| |||||  || |||||||||||||    
T  23704669 cttcgcaatccttgtctatattcacttgttccaatattaaaacttcatctttcgatccttcg-cttaatatttgtgatga 23704591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 22328894 - 22328845
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| ||||||| |||||||||||||||||||||| ||||||||    
T  22328894 tattctcatgtttcgcaacccttgtctaatttcacttgttccaatatcaa 22328845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 21516124 - 21516201
Alignment:
Q  33 ttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    ||||||||||||| || ||| |||||||| ||||| | ||||||| |||||||| |||||||| ||||||||| ||||||    
T  21516124 ttgtctaatttcatttattccaatatcaa-acttcatttttcgatccttcgttt-gatatttgagatgatgaaataacaa 21516201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 23340956 - 23340918
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  23340956 ttcgcaatccttgtctaaattcacttgttcgaatatcaa 23340918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 24177392 - 24177469
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatga 101  Q
    ||||| |||||||||||  ||||||||||| ||||| || ||||| ||||||||| |||||  || |||||||||||||    
T  24177392 ttcgctatccttgtctatattcacttgttccaatattaaaacttcatctttcgatccttcg-cttaatatttgtgatga 24177469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 24366005 - 24366043
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgt 50  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  24366005 tattctcatgtttcgcaatccttgtctaatttcacttgt 24366043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 32140361 - 32140323
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  32140361 ttcgcaacccttgtctaaattcacttgttcaaatatcaa 32140323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 29563594 - 29563545
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| |||||||||||| ||||| ||||||||||| ||||||||    
T  29563594 tattctcatgtttcgcaatccttttctaaattcacttgttcgaatatcaa 29563545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 41653298 - 41653347
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| ||| ||| |||||||||||||||||||||| ||||||||    
T  41653298 tattctcatgtttcacaacccttgtctaatttcacttgttccaatatcaa 41653347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 26854474 - 26854339
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  26854474 tattctcatgtttcacaatccttgtctaatttcacttgttccaatatcaaaacttcttctttcgatgctttgctttgatatttgtgatgatgaattaaca 26854375  T
Q  112 aatactagccctccgttgtcgctttataagtttgat 147  Q
    | ||||| ||||||||||||||||||| ||||||||    
T  26854374 agtactaaccctccgttgtcgctttatgagtttgat 26854339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 14161839 - 14161954
Alignment:
Q  31 ccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccctccgttgt 130  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| || || ||||| |||||    
T  14161839 ccttgtctaatttcacttgttcaa-tatcaaaacttcttctttcgatgcttcgctttgatatttgtgatgatgaattaacaagtattaaccctctgttgt 14161937  T
Q  131 cgctttataagtttgat 147  Q
    |||||||| ||||||||    
T  14161938 cgctttatgagtttgat 14161954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 19791914 - 19792048
Alignment:
Q  13 attctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    ||||| ||| ||| |||||||||||||||||||||||||  |||||||  ||||||| || ||||| |||| ||||||||||||||||||||||||||||    
T  19791914 attctcatgtttcacaatccttgtctaatttcacttgttacaatatcataacttcttattacgatgtttcgctttgatatttgtgatgatgaattaacaa 19792013  T
Q  113 atactagccctccgttgtcgctttataagtttgat 147  Q
     ||| | |||| ||||||||| |||| ||||||||    
T  19792014 gtaccaacccttcgttgtcgcattatgagtttgat 19792048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 24967658 - 24967553
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| || |||| |||||||||||||||||||||| ||||| || ||||| |||||||||  ||||  || |||||||||||||||||||||||    
T  24967658 tattctcatgttttgcaacccttgtctaatttcacttgttccaatattaaaacttcatctttcgatcattcg-cttaatatttgtgatgatgaattaaca 24967560  T
Q  112 aatacta 118  Q
    | |||||    
T  24967559 attacta 24967553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 147
Target Start/End: Complemental strand, 21319812 - 21319693
Alignment:
Q  27 caatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccctccg 126  Q
    |||||||||||||| ||||| ||||| ||||| ||  |||||||||||| | | | | ||  |||||| ||||||||||||||||| ||||| |||||||    
T  21319812 caatccttgtctaaattcacctgttccaatattaaatcttcttctttcggtccattgctta-atatttttgatgatgaattaacaagtactaaccctccg 21319714  T
Q  127 ttgtcgctttataagtttgat 147  Q
    ||||||| |||| ||||||||    
T  21319713 ttgtcgcattatgagtttgat 21319693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 24221238 - 24221337
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||| |||||||||||||||||||||||||| |||||||| ||||  |||||||||  ||||  |||||||||||||||| ||| |||||    
T  24221238 tattctcatgtttcacaatccttgtctaatttcacttgttccaatatcaaaactttatctttcgatatttcg-cttgatatttgtgatgacgaaataaca 24221336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 29004036 - 29003937
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||||||| |||| ||||||||||||||||| ||||| || ||||| ||||||||| |||||   | |||||||||||||||||||||||    
T  29004036 tattctcatgtttcgcaacccttttctaatttcacttgttccaatattaaaacttcatctttcgatccttcg-cctaatatttgtgatgatgaattaaca 29003938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 23193625 - 23193758
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| |||||||||||||||||||||||||||||| |||||||| || ||| |||||| |  |  |  |||| ||||| |||||||||||||||    
T  23193625 tattctcatgtttcgcaatccttgtctaatttcacttgttccaatatcaaaac-tctactttcgct-ttatgaattgacatttgagatgatgaattaaca 23193722  T
Q  112 aatactagccctccgttgtcgctttataagtttgat 147  Q
    ||||||| ||||||  | |||||| || ||||||||    
T  23193723 aatactaaccctccactttcgcttcatgagtttgat 23193758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 22904984 - 22904900
Alignment:
Q  27 caatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    ||||| |||||||||||||||||||| |||||||| || || |||||||||  ||||  |||||||||||||||||||| ||||||    
T  22904984 caatcattgtctaatttcacttgttccaatatcaaaacatcatctttcgatcgttcg-cttgatatttgtgatgatgaaataacaa 22904900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 6280140 - 6280102
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  6280140 ttcgcaatccttgtctaaattcacttgttcaaatatcaa 6280102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 1990175 - 1990224
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| ||||||| |||||||||||||||||||||| ||||||||    
T  1990175 tattctcatgtttcgcaacccttgtctaatttcacttgttccaatatcaa 1990224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 21140070 - 21140021
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| ||||||| |||||||||||||||||||||| ||||||||    
T  21140070 tattctcatgtttcgcaacccttgtctaatttcacttgttccaatatcaa 21140021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 26013324 - 26013280
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttc 67  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||    
T  26013324 ttcgcaatccttgtctaaattcacttgttccaatatcaaaacttc 26013280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 9318225 - 9318190
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    ||||||||||||||| ||||||||||||||||||||    
T  9318225 gcaatccttgtctaagttcacttgttcaaatatcaa 9318190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 16418136 - 16418171
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    ||||||||||||||| ||||||||||||||||||||    
T  16418136 gcaatccttgtctaaattcacttgttcaaatatcaa 16418171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 23779803 - 23779768
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    ||||||||||||||| ||||||||||||||||||||    
T  23779803 gcaatccttgtctaaattcacttgttcaaatatcaa 23779768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 23455969 - 23455913
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttc 82  Q
    ||||||||||||||  ||||||||||| ||||| || ||||| ||||||||| ||||    
T  23455969 gcaatccttgtctatattcacttgttccaatattaaaacttcatctttcgatccttc 23455913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 6e-47; HSPs: 54)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 23523629 - 23523764
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23523629 tattcttatgtttcgcaatccttgtctaatttcacttgttcaaatatcaaaacttcttctttcgatgcttcgctttgatatttgtgatgatgaattaaca 23523728  T
Q  112 aatactagccctccgttgtcgctttataagtttgat 147  Q
    | |||   ||||||| |||| |||||||||||||||    
T  23523729 agtaccgaccctccgatgtcactttataagtttgat 23523764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 25923068 - 25923201
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| |||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25923068 tattctcatgtttcgcaatccttgtctaatttcacttgttccaatataaaaacttcttctttcgatgcttcgctttgatatttgtgatgatgaattaaca 25923167  T
Q  112 aatactagccctccgttgtcgctttataagtttg 145  Q
    ||||||| ||||||| | ||||||||| ||||||    
T  25923168 aatactaaccctccgctatcgctttatgagtttg 25923201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 25030900 - 25031035
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| || ||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |||||||||| ||||||||||||||||    
T  25030900 tattctcatgttttgcaatccttgtctaatttcacttgttccaatatcaaaacttcttccttcgatgcttcgctttgatatttatgatgatgaattaaca 25030999  T
Q  112 aatactagccctccgttgtcgctttataagtttgat 147  Q
    ||||||| |||||||||||||| |||| ||||||||    
T  25031000 aatactaaccctccgttgtcgcattatgagtttgat 25031035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 19612420 - 19612555
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  19612420 tattctcatgtttcacaatccttgtctaatttcacttgttccaatatcaaaacttcttctttcgatgcttcactttgatatttgtgatgatgaattaaca 19612519  T
Q  112 aatactagccctccgttgtcgctttataagtttgat 147  Q
    | ||||| ||||||  ||||||||||| ||||||||    
T  19612520 agtactaaccctccactgtcgctttatgagtttgat 19612555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 26822264 - 26822124
Alignment:
Q  7 taaattattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaat 106  Q
    |||| |||||| ||| || ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||||||| |||    
T  26822264 taaactattctcatgttttgcaatccttgtctaatttcacttgttccaatatcaaaacttcttctttcgatgcttcgctttaatatttgtgatgataaat 26822165  T
Q  107 taacaaatactagccctccgttgtcgctttataagtttgat 147  Q
    |||||| ||||| ||||||| | |||| |||||||||||||    
T  26822164 taacaagtactaaccctccgctatcgcattataagtttgat 26822124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 23510081 - 23510216
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| || |||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  23510081 tattctcatgttttgcaatccttgtctactttcacttgttacaatatcaaaacttcttctttcgatgcttcactttgatatttgtgatgatgaattaaca 23510180  T
Q  112 aatactagccctccgttgtcgctttataagtttgat 147  Q
    | ||||| ||||||| ||||||||||| ||||||||    
T  23510181 agtactaaccctccgatgtcgctttatgagtttgat 23510216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 19994000 - 19993868
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||| ||||||||||||||||||||||||||  ||||||| | || |||||||||||||||| |||||||||||| ||||||||||||||    
T  19994000 tattctcatgtttcacaatccttgtctaatttcacttgttccgatatcaaaaatt-ttctttcgatgcttcgctttgatatttgtcatgatgaattaaca 19993902  T
Q  112 aatactagccctccgttgtcgctttataagtttg 145  Q
    ||||||| ||||||||||| ||||||| ||||||    
T  19993901 aatactaaccctccgttgttgctttatgagtttg 19993868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 28721008 - 28721113
Alignment:
Q  13 attctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    ||||| ||| |||||||||||||||||||||||||||||| |||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||    
T  28721008 attctcatgtttcgcaatccttgtctaatttcacttgttccaatatcaaaatttcttctttcgatgtttcgttttgatatttgtgatgatgaattaacaa 28721107  T
Q  113 atacta 118  Q
     |||||    
T  28721108 gtacta 28721113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 18627834 - 18627699
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||| |||||||||||||||||||||| ||| |||||||| |||||||||||| |||||| |||||||||||||||||| | ||||||||    
T  18627834 tattctcatgtttcacaatccttgtctaatttcactttttccaatatcaagacttcttctttctatgctttgttttgatatttgtgatggtaaattaaca 18627735  T
Q  112 aatactagccctccgttgtcgctttataagtttgat 147  Q
    | ||||| |||| |||||| ||||| | ||||||||    
T  18627734 agtactaaccctgcgttgttgctttgtgagtttgat 18627699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 28733822 - 28733956
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||||||||||||| |||||||||||||||| |||||||| | |||||||||||||| |||| ||||||||||||||||||||| |||||    
T  28733822 tattctcatgtttcgcaatccttg-ctaatttcacttgttccaatatcaaaatttcttctttcgatgtttcgctttgatatttgtgatgatgaactaaca 28733920  T
Q  112 aatactagccctccgttgtcgctttataagtttgat 147  Q
    | ||||| ||||||  |||||| |||| ||||||||    
T  28733921 agtactaaccctcctctgtcgcattatgagtttgat 28733956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 29 - 147
Target Start/End: Original strand, 12660143 - 12660260
Alignment:
Q  29 atccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccctccgtt 128  Q
    |||||||| ||||||||||||||| |||||||| ||||||| ||||||||||||  |||||||||||||||||||||||||||| ||||| ||||||| |    
T  12660143 atccttgtttaatttcacttgttccaatatcaaaacttctt-tttcgatgcttctctttgatatttgtgatgatgaattaacaagtactaaccctccgct 12660241  T
Q  129 gtcgctttataagtttgat 147  Q
    ||||| |||| ||||||||    
T  12660242 gtcgcattatgagtttgat 12660260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 25338914 - 25339052
Alignment:
Q  7 taaattattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaat 106  Q
    |||| |||||| ||| ||||||||| |||||||||| || |||||| |||||||| |||| |||||| ||||||||  ||||||||||||||| ||||||    
T  25338914 taaactattcttatgtttcgcaatcattgtctaattccatttgttccaatatcaaaacttattcttttgatgcttcactttgatatttgtgataatgaat 25339013  T
Q  107 taacaaatactagccctccgttgtcgctttataagtttg 145  Q
    ||||||||| || ||||  ||||||||||||| ||||||    
T  25339014 taacaaataataaccctatgttgtcgctttatgagtttg 25339052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 3924041 - 3923941
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| |||||||||||||||||| ||||||||||| ||||| ||  |||||||||||||||||||  ||||||||||||||| |||||||||||    
T  3924041 tattctcatgtttcgcaatccttgtctaaattcacttgttccaatattaaagcttcttctttcgatgcttcactttgatatttgtgattatgaattaaca 3923942  T
Q  112 a 112  Q
    |    
T  3923941 a 3923941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 20221589 - 20221490
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| |||||||||||||||||||||||||||||  |||||||| |||||  |||||||| |||||  |||||||||||||||||||| |||||    
T  20221589 tattctcatgtttcgcaatccttgtctaatttcacttgtttcaatatcaaaacttcaactttcgatccttcg-cttgatatttgtgatgatgaaataaca 20221491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 22115573 - 22115474
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| |||||||||||||||||||||||||||||  |||||||| |||||  |||||||| |||||  |||||||||||||||||||| |||||    
T  22115573 tattctcatgtttcgcaatccttgtctaatttcacttgtttcaatatcaaaacttcaactttcgatccttcg-cttgatatttgtgatgatgaaataaca 22115475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 17793675 - 17793760
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||||||||||||||||| |||||| |||||||| ||||| ||||||||| |||||  |||||||||||||| ||||||||||||    
T  17793675 gcaatccttgtctaatttcatttgttccaatatcaaaacttcatctttcgatacttcg-cttgatatttgtgattatgaattaacaa 17793760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 24392576 - 24392677
Alignment:
Q  10 attattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaa 109  Q
    |||||||| ||| ||| ||||||||||||||||||||||||| ||||||||| ||||| |||||||||  || | ||| |||||||||||  ||||||||    
T  24392576 attattctcatgtttcacaatccttgtctaatttcacttgttaaaatatcaaaacttcatctttcgatcttttgcttt-atatttgtgattgtgaattaa 24392674  T
Q  110 caa 112  Q
    |||    
T  24392675 caa 24392677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 16470366 - 16470243
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccc 122  Q
    |||||||||||||||||| |||||||||||||||||||| |||||  |||||| |   | |  |||||||||| |||||||||||||||| ||||| |||    
T  16470366 ttcgcaatccttgtctaaattcacttgttcaaatatcaaaacttccactttcgcttgat-gaattgatatttgagatgatgaattaacaattactaaccc 16470268  T
Q  123 tccgttgtcgctttataagtttgat 147  Q
    |||  | |||||| || ||||||||    
T  16470267 tccactttcgcttcatgagtttgat 16470243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 18974061 - 18973963
Alignment:
Q  10 attattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaa 109  Q
    |||||||| ||| ||| | |||| ||||||||||||||||||| ||||| || ||||| ||||||||| |||||  |||||||||||||| |||||||||    
T  18974061 attattctcatgtttcactatccctgtctaatttcacttgttccaatattaaaacttcatctttcgattcttcg-cttgatatttgtgattatgaattaa 18973963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 14893834 - 14893772
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttc 74  Q
    |||||| ||| || ||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  14893834 tattctcatgttttgcaatccttgtctaatttcacttgttccaatatcaaaacttcttctttc 14893772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 25507981 - 25507861
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccc 122  Q
    |||||||||||||||||||||||||||||| ||||||||  ||||  | |||| |   | |  ||||||||||||||||||||||||||||||||| |||    
T  25507981 ttcgcaatccttgtctaatttcacttgttccaatatcaaagcttcg-cgttcgctttat-gaattgatatttgtgatgatgaattaacaaatactaaccc 25507884  T
Q  123 tccgttgtcgctttataagtttg 145  Q
    ||||   ||||||||| ||||||    
T  25507883 tccgcgttcgctttatgagtttg 25507861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 26139054 - 26138933
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccc 122  Q
    |||||||||||||||||||||||||||||| ||||||||  || | | || || |  |  |  ||||||||||||||||||||||||||||||||| |||    
T  26139054 ttcgcaatccttgtctaatttcacttgttccaatatcaaagctccgtgtt-cgcttttatgaattgatatttgtgatgatgaattaacaaatactatccc 26138956  T
Q  123 tccgttgtcgctttataagtttg 145  Q
    ||||   ||||||||| ||||||    
T  26138955 tccgcgttcgctttatgagtttg 26138933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 20435645 - 20435534
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| |||||||||||||||||||||||||||||| |||||||| || ||  |||||| |  |  |  |||||||||||||||||| |||||||    
T  20435645 tattctcatgtttcgcaatccttgtctaatttcacttgttccaatatcaaaac-tccactttcgct-ttatgaattgatatttgtgatgatggattaaca 20435548  T
Q  112 aatactagccctcc 125  Q
    ||||||| ||||||    
T  20435547 aatactaaccctcc 20435534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 20218231 - 20218290
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccgttgtcgctttataagtttg 145  Q
    ||||||||||||||||||||||||||| || || ||||| ||||||||||||| ||||||    
T  20218231 ttgatatttgtgatgatgaattaacaactagtaaccctctgttgtcgctttatgagtttg 20218290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 22112256 - 22112315
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccgttgtcgctttataagtttg 145  Q
    ||||||||||||||||||||||||||| || || ||||| ||||||||||||| ||||||    
T  22112256 ttgatatttgtgatgatgaattaacaactagtaaccctctgttgtcgctttatgagtttg 22112315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 26018289 - 26018230
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccgttgtcgctttataagtttg 145  Q
    ||||||||||||||||||||||||||||||||| |||||||   ||||||||| ||||||    
T  26018289 ttgatatttgtgatgatgaattaacaaatactatccctccgcgttcgctttatgagtttg 26018230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 31965213 - 31965297
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    ||||||||||||||||||||||||||  |||||||| ||||| ||||| |||  ||||  |||||||||||||||||||| ||||||    
T  31965213 gcaatccttgtctaatttcacttgttttaatatcaa-acttcatcttttgatcattcg-cttgatatttgtgatgatgaaataacaa 31965297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 4741386 - 4741337
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| |||||||||||||||||||||||||||||| ||||||||    
T  4741386 tattctcatgtttcgcaatccttgtctaatttcacttgttccaatatcaa 4741337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 20225484 - 20225387
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||||||||| ||||||||||||| |||||| |||||||  ||||| ||||||||| ||||   |||| ||||||||||||||| |||||    
T  20225484 tattctcatgtttcgcaatcgttgtctaatttcaattgttccaatatca--acttcatctttcgatccttc-ccttgacatttgtgatgatgaaataaca 20225388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 22119468 - 22119371
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||||||||| ||||||||||||| |||||| |||||||  ||||| ||||||||| ||||   |||| ||||||||||||||| |||||    
T  22119468 tattctcatgtttcgcaatcgttgtctaatttcaattgttccaatatca--acttcatctttcgatccttc-ccttgacatttgtgatgatgaaataaca 22119372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 29682997 - 29682910
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||| |||||  ||||||||| | ||| |||| ||||||    
T  29682997 ttcgcagtccttgtctaatttcacttgttccaatatcaa-acttcatctttcgatacttcg-cttgatatttataatgttgaaataacaa 29682910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 15172628 - 15172538
Alignment:
Q  10 attattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatga 101  Q
    |||||| | ||| |||||||||| ||||||||||||||||||| |||||||| || || | ||||||| ||||   ||||||||||||||||    
T  15172628 attattgtcatgtttcgcaatccctgtctaatttcacttgttccaatatcaaaacatcatatttcgatccttc-acttgatatttgtgatga 15172538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 20439281 - 20439242
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctcc 125  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  20439281 ttgatatttgtgatgatgaattaacaaatactaaccctcc 20439242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 20464760 - 20464690
Alignment:
Q  28 aatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgat 99  Q
    |||||||||||||||| |||||||| |||||||| ||||| ||||||||| ||| |  ||||||||||||||    
T  20464760 aatccttgtctaatttaacttgttccaatatcaaaacttcatctttcgatcctttg-cttgatatttgtgat 20464690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 24545379 - 24545438
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccgttgtcgctttataagtttg 145  Q
    |||||||||| |||||||||||||||||||||| |||||||   ||||||||| ||||||    
T  24545379 ttgatatttgagatgatgaattaacaaatactaaccctccgcattcgctttatgagtttg 24545438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 26157662 - 26157603
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccgttgtcgctttataagtttg 145  Q
    |||||||||||||||||||||||| |||||||| |||||||   ||||||||| ||||||    
T  26157662 ttgatatttgtgatgatgaattaataaatactatccctccgcgttcgctttatgagtttg 26157603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 15162595 - 15162526
Alignment:
Q  31 ccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatga 101  Q
    ||||| |||||||||||||||| |||||||| ||||| ||||||||| ||||  ||| |||||||||||||    
T  15162595 ccttgcctaatttcacttgttccaatatcaaaacttcatctttcgatccttcacttt-atatttgtgatga 15162526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 29254386 - 29254337
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| ||| |||||||||||||||||||||||||| ||||||||    
T  29254386 tattctcatgtttctcaatccttgtctaatttcacttgttccaatatcaa 29254337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 14991972 - 14992032
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcg 83  Q
    |||||||||||||||||  ||||||||||| ||||| || ||||| ||||||||| |||||    
T  14991972 ttcgcaatccttgtctatattcacttgttccaatattaaaacttcatctttcgatacttcg 14992032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 29254314 - 29254255
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccgttgtcgctttataagtttg 145  Q
    ||||||||||||||||| ||||||||||||||| ||||| |   ||||||||| ||||||    
T  29254314 ttgatatttgtgatgataaattaacaaatactaaccctctgcgttcgctttatgagtttg 29254255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 5399618 - 5399564
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgat 77  Q
    ||||||| |||||||||| ||||||||||| ||||| || ||||| |||||||||    
T  5399618 ttcgcaacccttgtctaaattcacttgttccaatattaaaacttcatctttcgat 5399564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 19695802 - 19695764
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  19695802 ttcgcaatccttgtctaatttcacttgtaccaatatcaa 19695764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 20439338 - 20439304
Alignment:
Q  27 caatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||||||||||||||||||||| ||||||||    
T  20439338 caatccttgtctaatttcacttgttccaatatcaa 20439304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 24545302 - 24545356
Alignment:
Q  7 taaattattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||| |||||| ||| ||| ||| |||||||||||||||||||||| ||||||||    
T  24545302 taaactattctcatgtttcccaacccttgtctaatttcacttgttccaatatcaa 24545356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 25968953 - 25968915
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  25968953 ttcgcaatccttgtctaaattcacttgttcgaatatcaa 25968915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 26018350 - 26018312
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  26018350 ttcgcaatcattgtctaatttcacttgttccaatatcaa 26018312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 26157723 - 26157685
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  26157723 ttcgcaatctttgtctaatttcacttgttccaatatcaa 26157685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 5949377 - 5949426
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| ||| |||||||||||||| || |||||||||||||||||    
T  5949377 tattctcatgtttcacaatccttgtctaaatttacttgttcaaatatcaa 5949426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 15154066 - 15154033
Alignment:
Q  28 aatccttgtctaatttcacttgttcaaatatcaa 61  Q
    ||||||||||||| ||||||||||||||||||||    
T  15154066 aatccttgtctaaattcacttgttcaaatatcaa 15154033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 15158524 - 15158491
Alignment:
Q  28 aatccttgtctaatttcacttgttcaaatatcaa 61  Q
    ||||||||||||| ||||||||||||||||||||    
T  15158524 aatccttgtctaaattcacttgttcaaatatcaa 15158491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 17743874 - 17743833
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaatacttc 67  Q
    ||||||||||||||| ||||||||||| |||||||| |||||    
T  17743874 gcaatccttgtctaaattcacttgttcgaatatcaaaacttc 17743833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 25964317 - 25964268
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||| ||||| ||||||||||| |||||| ||||||||||| ||||||||    
T  25964317 tattttaatgtttcgcaatcctagtctaaattcacttgttcgaatatcaa 25964268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 26474352 - 26474303
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| |||||||| ||||||||| ||||||||||| ||||||||    
T  26474352 tattctcatgtttcgcaattcttgtctaaattcacttgttcgaatatcaa 26474303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 18993562 - 18993514
Alignment:
Q  13 attctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    ||||| ||| ||||||||||||| |||||||||| ||||| ||||||||    
T  18993562 attcttatgtttcgcaatccttgcctaatttcacatgttccaatatcaa 18993514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 12410929 - 12410794
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| || ||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||  |||||||||||||||||||||||||||    
T  12410929 tattctcatgttttgcaatccttgtctaatttcacttgttccaatatcaaaacttcttccttcgatgcttcactttgatatttgtgatgatgaattaaca 12410830  T
Q  112 aatactagccctccgttgtcgctttataagtttgat 147  Q
    | ||||| ||||||||||||||||||| ||||||||    
T  12410829 agtactaaccctccgttgtcgctttatgagtttgat 12410794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 2953067 - 2953193
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| | |    
T  2953067 tattctcatgtttcgcaatccttgtctaatttcacttgttccaatatcaaaacttcttctttcggtgcttcgctttgatatttgtgatgatgaattgata 2953166  T
Q  112 aatactagccctccgttgtcgctttat 138  Q
    ||||||| |||||  ||||||||||||    
T  2953167 aatactaaccctctcttgtcgctttat 2953193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 16677481 - 16677355
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| || |||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16677481 tattctcatgttttgcaatctttgtctaaattcacttgttccaatatcaaaacttcttctttcgatgcttcgttttgatatttgtgattatgaattaaca 16677382  T
Q  112 aatactagccctccgttgtcgctttat 138  Q
    | ||||| |||||||||| ||||||||    
T  16677381 agtactaaccctccgttgccgctttat 16677355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 22171194 - 22171054
Alignment:
Q  7 taaattattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaat 106  Q
    |||| |||||| ||| |||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||||||||||| ||| || |||    
T  22171194 taaactattcttatgtttcgcaatccttgtctaaattcacttgttccaatatcaaaacttcttctttcgatgcttcgctttgatatttgagattataaat 22171095  T
Q  107 taacaaatactagccctccgttgtcgctttataagtttgat 147  Q
    |||||| |||||  |||||| ||||||||||| | ||||||    
T  22171094 taacaagtactaatcctccgctgtcgctttatgaatttgat 22171054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 24166666 - 24166565
Alignment:
Q  10 attattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaa 109  Q
    |||||||| ||| |||||||||||||||||||||||||||||| ||||||||  |||| ||||||||| |||||  |||||||||||||||||||| |||    
T  24166666 attattctcatgtttcgcaatccttgtctaatttcacttgttccaatatcaaatcttcatctttcgatccttcg-cttgatatttgtgatgatgaaataa 24166568  T
Q  110 caa 112  Q
    |||    
T  24166567 caa 24166565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 23029255 - 23029353
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| |||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||| |||||  |||||||||||||||||||| |||||    
T  23029255 tattctcatgtttcgcaatccttgtctaatttcacctgttccaatatcaa-acttcatctttcgatccttcg-cttgatatttgtgatgatgaaataaca 23029352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 24165656 - 24165557
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||||||| |||||||||||||||||||||| ||||| || ||||| ||||||||| |||||  || |||||||||||||||||||||||    
T  24165656 tattctcatgtttcgcaacccttgtctaatttcacttgttccaatattaaaacttcatctttcgatccttcg-cttaatatttgtgatgatgaattaaca 24165558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 31414884 - 31414806
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgat 90  Q
    |||||| ||| || ||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| ||||||    
T  31414884 tattctcatgttttgcaatccttgtgtaatttcacttgttccaatatcaaaacttcttctttcgatgcttcgctttgat 31414806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 20738699 - 20738625
Alignment:
Q  71 tttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccctccgttgtcgctttataagtttg 145  Q
    ||||||||| ||| |||||||||| ||||||||||||||||||||||| ||||||| | ||||||||| ||||||    
T  20738699 tttcgatgcctcgctttgatatttatgatgatgaattaacaaatactaaccctccgctatcgctttatgagtttg 20738625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 19222293 - 19222215
Alignment:
Q  32 cttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||||||||||| |||||| |||||||| ||||| |||| |||| ||||| ||||||||||| ||||||||| ||||||    
T  19222293 cttgtctaatttcatttgttccaatatcaa-acttcatcttccgatccttcg-tttgatatttgagatgatgaaataacaa 19222215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 31757822 - 31757871
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| ||||||| |||||||||||||||||||||| ||||||||    
T  31757822 tattctcatgtttcgcaacccttgtctaatttcacttgttccaatatcaa 31757871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 34222818 - 34222867
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| ||||||| |||||||||||||||||||||| ||||||||    
T  34222818 tattctcatgtttcgcaacccttgtctaatttcacttgttccaatatcaa 34222867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 6406654 - 6406619
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    ||||||||||||||| ||||||||||||||||||||    
T  6406654 gcaatccttgtctaaattcacttgttcaaatatcaa 6406619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 31757886 - 31757933
Alignment:
Q  98 atgatgaattaacaaatactagccctccgttgtcgctttataagtttg 145  Q
    ||||||||||||||||||| | |||||||||||||| |||| ||||||    
T  31757886 atgatgaattaacaaatacgaaccctccgttgtcgcattatgagtttg 31757933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 20738745 - 20738699
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatat 58  Q
    |||||| ||| ||||||||||| |||||||||||||||||| |||||    
T  20738745 tattctcatgtttcgcaatcctggtctaatttcacttgttccaatat 20738699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 21382669 - 21382631
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  21382669 ttcgcaatccttgtctaaattcacttgttcgaatatcaa 21382631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 21833318 - 21833280
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  21833318 ttcgcaatccttgtctaaattcacttgttcgaatatcaa 21833280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 23435726 - 23435677
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| ||||||||||||||| || ||||||||||| ||||||||    
T  23435726 tattctcatgtttcgcaatccttgtccaaattcacttgttcgaatatcaa 23435677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 23447093 - 23447044
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| ||||||||||||||| || ||||||||||| ||||||||    
T  23447093 tattctcatgtttcgcaatccttgtccaaattcacttgttcgaatatcaa 23447044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 19890072 - 19890040
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatacta 118  Q
    |||||||||| ||||||||||||||||||||||    
T  19890072 ttgatatttgagatgatgaattaacaaatacta 19890040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 23114659 - 23114561
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| |||| |||||||||||||||||| |||||| ||||| || ||||| || ||| ||  ||||  |||||||||| ||||||||| |||||    
T  23114659 tattctcatgtttcgtaatccttgtctaatttcatttgttccaatattaa-acttcatcattctatcattcg-cttgatatttgagatgatgaaataaca 23114562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 12059461 - 12059598
Alignment:
Q  10 attattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaa 109  Q
    |||||||| ||| |||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  12059461 attattctcatgtttcgcaatccttgtctaatttcacttcttccaatatcaaaacttcttctttcgatgcttcgctttgatatttgtgatgatgaattaa 12059560  T
Q  110 caaatactagccctccgttgtcgctttataagtttgat 147  Q
    |||  |||| ||||||| |||||| |||| ||||||||    
T  12059561 caagcactaaccctccgctgtcgcattatgagtttgat 12059598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 13799142 - 13799257
Alignment:
Q  31 ccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccctccgttgt 130  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| || || |||||||||||    
T  13799142 ccttgtctaatttcacttgttcaa-tatcaaaacttcttctttcgatgcttcgctttgatatttgtgatgatgaatcaacaagtattaaccctccgttgt 13799240  T
Q  131 cgctttataagtttgat 147  Q
    |||||||| ||||||||    
T  13799241 cgctttatgagtttgat 13799257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 16148146 - 16148267
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccctcc 125  Q
    ||||||||||| ||||||||||||| | ||| |||| ||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  16148146 gcaatccttgtttaatttcacttgtgccaatttcaaaacttcttatttcgatgcttcgctttgatatttgtgatgatgaattaacaagtactaaccctcc 16148245  T
Q  126 gttgtcgctttataagtttgat 147  Q
    | |||||| |||| ||||||||    
T  16148246 gctgtcgcattatgagtttgat 16148267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 16384655 - 16384751
Alignment:
Q  27 caatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccctc 124  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||||||||| |||||  |||||||||||||| |||||||||||| ||||| |||||    
T  16384655 caatccttgtctaatttcacttgttccaatatcaaaacttcatctttcgatacttcg-cttgatatttgtgattatgaattaacaagtactaaccctc 16384751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 21240465 - 21240394
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcg 83  Q
    |||||| ||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||    
T  21240465 tattctcatgtttcgcaatccttgtctaatttcacttgttccaatatcaaaacttcttctttcgatgtttcg 21240394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 22411501 - 22411407
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatacta 118  Q
    ||||||| |||||||||||||||||||||| ||||| || ||||| ||||||||| |||||  || |||||||||||||||||||||||| |||||    
T  22411501 ttcgcaacccttgtctaatttcacttgttccaatattaaaacttcatctttcgatccttcg-cttaatatttgtgatgatgaattaacaattacta 22411407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 16354488 - 16354383
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||||||| |||||||||||||||||||||| ||||| || ||||| ||||||||| ||||   || |||||||||||||||||||||||    
T  16354488 tattctcatgtttcgcaacccttgtctaatttcacttgttccaatattaaaacttcatctttcgatccttc-acttaatatttgtgatgatgaattaaca 16354390  T
Q  112 aatacta 118  Q
    | |||||    
T  16354389 attacta 16354383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 20860391 - 20860451
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcg 83  Q
    |||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| |||||    
T  20860391 ttcgcaatccttgtctaatttcacttgttccaatatcaaaacttcatctttcgatccttcg 20860451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 26194632 - 26194541
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaa 109  Q
    |||||| ||| |||||||||||||||||||||||||||||| |||||     |||| ||||||||| |||||  |||||||||||||| |||||||||    
T  26194632 tattctcatgtttcgcaatccttgtctaatttcacttgttccaatat-----cttcatctttcgatccttcg-cttgatatttgtgattatgaattaa 26194541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 2130328 - 2130250
Alignment:
Q  32 cttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||||||||||| |||||| |||||||| ||||| ||||||||| ||||| ||||||||||| ||||||||| ||||||    
T  2130328 cttgtctaatttcatttgttccaatatcaa-acttcatctttcgatccttcg-tttgatatttgagatgatgaactaacaa 2130250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 28763632 - 28763693
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccgttgtcgctttataagtttgat 147  Q
    |||||||||| ||||||||||||||||||| |||||||||  | ||||||||| ||||||||    
T  28763632 ttgatatttgagatgatgaattaacaaatattagccctccactttcgctttatgagtttgat 28763693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 15421479 - 15421401
Alignment:
Q  32 cttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||||||||||| |||||| |||||||| ||||| ||||||||| ||||| ||| ||||||| ||||||||| ||||||    
T  15421479 cttgtctaatttcatttgttccaatatcaa-acttcatctttcgatccttcg-tttcatatttgagatgatgaaataacaa 15421401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 23299276 - 23299206
Alignment:
Q  27 caatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtga 98  Q
    |||||||||||||| || ||||||||||||||||| ||||| |||||||||  ||||  |||||||||||||    
T  23299276 caatccttgtctaaattaacttgttcaaatatcaaaacttcatctttcgatcattcg-cttgatatttgtga 23299206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 20898353 - 20898426
Alignment:
Q  27 caatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatga 101  Q
    |||||||||||||||||||||||||| |||||||| | ||  ||||||||| ||| |  ||||||||||||||||    
T  20898353 caatccttgtctaatttcacttgttcgaatatcaaaattttctctttcgatcctttg-cttgatatttgtgatga 20898426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 20497944 - 20497876
Alignment:
Q  27 caatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgt 96  Q
    |||||||||||||| ||||||||||| | |||||| ||||| ||||||||| |||||  |||||||||||    
T  20497944 caatccttgtctaaattcacttgttccactatcaaaacttcatctttcgatccttcg-cttgatatttgt 20497876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 16527360 - 16527438
Alignment:
Q  32 cttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||||||||||| |||||| || ||||| ||||| |||||||||  ||||||| |||||||| ||||||||| ||||||    
T  16527360 cttgtctaatttcatttgttccaaaatcaa-acttcatctttcgatcattcgttt-gatatttgagatgatgaaataacaa 16527438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 20448795 - 20448724
Alignment:
Q  27 caatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgat 99  Q
    |||||||||||||| || |||||||| |||||||| ||||| ||||||||| ||||   ||||||||||||||    
T  20448795 caatccttgtctaaatttacttgttccaatatcaaaacttcatctttcgatccttc-acttgatatttgtgat 20448724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 20534561 - 20534490
Alignment:
Q  27 caatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgat 99  Q
    |||||||||||||| || |||||||| |||||||| ||||| ||||||||| ||||   ||||||||||||||    
T  20534561 caatccttgtctaaatttacttgttccaatatcaaaacttcatctttcgatccttc-acttgatatttgtgat 20534490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 30818868 - 30818935
Alignment:
Q  10 attattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgat 77  Q
    |||||||| ||  ||||||||||||| |||| ||||||||||| ||||| || ||||| |||||||||    
T  30818868 attattctcatatttcgcaatccttgactaaattcacttgttccaatattaaaacttcatctttcgat 30818935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 38045723 - 38045688
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    ||||||||||||||| ||||||||||||||||||||    
T  38045723 gcaatccttgtctaaattcacttgttcaaatatcaa 38045688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 38652549 - 38652425
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccc 122  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||| ||| | |||    
T  38652549 ttcgcaatccttgtctaatttcacttgtttcaatatcaaaacttcttctttcgatgcttcactttgatatttgtgatgatgaattaacaagtaccaaccc 38652450  T
Q  123 tccgttgtcgctttataagtttgat 147  Q
    |||||||||||||||| ||||||||    
T  38652449 tccgttgtcgctttatgagtttgat 38652425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 8562015 - 8562125
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccc 122  Q
    |||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||    
T  8562015 ttcgcaatccttgtctaatttcacttgttccaatataaaaacttcttctttcgatgcttcgctttgatatttgtgatgatgaattaacaagtactaaccc 8562114  T
Q  123 tccgttgtcgc 133  Q
    |||||||||||    
T  8562115 tccgttgtcgc 8562125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 9192640 - 9192507
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||| |||||| ||||||||||||||||||| |||||||| |||| ||||||| |||||||  |||||||||||||||||||||||||||    
T  9192640 tattctcatgtttcacaatccatgtctaatttcacttgttctaatatcaaaactttttctttcaatgcttcactttgatatttgtgatgatgaattaaca 9192541  T
Q  112 aatactagccctccgttgtcgctttataagtttg 145  Q
    ||||||| || |||||||||||||||| ||||||    
T  9192540 aatactaaccgtccgttgtcgctttatgagtttg 9192507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 12807878 - 12807972
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatacta 118  Q
    ||||||| |||||||||||||||||||||| ||||| || ||||| ||||||||| |||||  || |||||||||||||||||||||||| |||||    
T  12807878 ttcgcaacccttgtctaatttcacttgttccaatattaaaacttcatctttcgatccttcg-attaatatttgtgatgatgaattaacaattacta 12807972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 33330710 - 33330794
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    ||||||||||||||||||||||||||| |||||||| | ||| ||||||||| |||||  |||||||||||||| |||||||||||    
T  33330710 gcaatccttgtctaatttcacttgttccaatatcaaaatttcatctttcgatacttcg-cttgatatttgtgattatgaattaaca 33330794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 17169188 - 17169090
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| |||||||||||||||||| ||||||| ||| |||||||| ||||| ||||||||| |||||  |||||||||||||||||||| |||||    
T  17169188 tattctcatgtttcgcaatccttgtctaaattcacttattccaatatcaa-acttcatctttcgatccttcg-cttgatatttgtgatgatgaaataaca 17169091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 17174748 - 17174650
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| |||||||||||||||||| ||||||| ||| |||||||| ||||| ||||||||| |||||  |||||||||||||||||||| |||||    
T  17174748 tattctcatgtttcgcaatccttgtctaaattcacttattccaatatcaa-acttcatctttcgatccttcg-cttgatatttgtgatgatgaaataaca 17174651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 25190587 - 25190488
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| |||||||||||||||||||||||||||||| ||| |||| ||||| ||||| |||  ||||  |||||||||||||| |||||||||||    
T  25190587 tattctcatgtttcgcaatccttgtctaatttcacttgttccaatgtcaaaacttcatcttttgatctttcg-cttgatatttgtgattatgaattaaca 25190489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 3771877 - 3772010
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| |||||||||||| ||||||||||||||||| ||||||||  ||||  | |||| |   | |  ||||||||||||||||||||||||||    
T  3771877 tattctcatgtttcgcaatccttttctaatttcacttgttccaatatcaaagcttcg-cgttcgctttat-gaattgatatttgtgatgatgaattaaca 3771974  T
Q  112 aatactagccctccgttgtcgctttataagtttgat 147  Q
    ||||||| |||||||   ||||||||| ||||||||    
T  3771975 aatactaaccctccgcgttcgctttatgagtttgat 3772010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 5675872 - 5675760
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| || ||||| ||||| | ||||||||||||  |||||||| ||||||||||||| | |||||  |||||||||||||| |||||| ||||    
T  5675872 tattctcatgttttgcaatacttgtttgatttcacttgtttcaatatcaaaacttcttctttcggtacttcg-cttgatatttgtgattatgaataaaca 5675774  T
Q  112 aatactagccctcc 125  Q
    | ||||| ||||||    
T  5675773 agtactaaccctcc 5675760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 55268154 - 55268076
Alignment:
Q  32 cttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||||||||||| |||||| |||||||| ||||| ||||||||| ||||| ||||||||||| ||||||||| ||||||    
T  55268154 cttgtctaatttcatttgttccaatatcaa-acttcatctttcgatccttcg-tttgatatttgagatgatgaaataacaa 55268076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 4743164 - 4743086
Alignment:
Q  32 cttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||||||||||| |||||| |||||||| ||||| ||||| ||| ||||| ||||||||||| ||||||||| ||||||    
T  4743164 cttgtctaatttcatttgttccaatatcaa-acttcatcttttgatccttcg-tttgatatttgagatgatgaaataacaa 4743086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 24493325 - 24493247
Alignment:
Q  32 cttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||||||||||| |||||| |||||||| ||||| |||||| || ||||| ||||||||||| ||||||||| ||||||    
T  24493325 cttgtctaatttcatttgttccaatatcaa-acttcatctttcaatccttcg-tttgatatttgagatgatgaaataacaa 24493247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 12345658 - 12345729
Alignment:
Q  27 caatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgat 99  Q
    ||||||||||||||| |||||||||  |||||||| ||||| ||||| ||| |||||  ||||||||||||||    
T  12345658 caatccttgtctaatgtcacttgttgcaatatcaaaacttcatcttttgatccttcg-cttgatatttgtgat 12345729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 11902326 - 11902400
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatga 101  Q
    ||||||||||||||  ||||||||||| ||||| || ||||| ||||||||| |||||  || |||||||||||||    
T  11902326 gcaatccttgtctatattcacttgttccaatattaaaacttcatctttcgatccttcg-cttaatatttgtgatga 11902400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 39423 - 39472
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| ||||||| ||||||||||||| |||||||| ||||||||    
T  39423 tattctcatgtttcgcaacccttgtctaatttaacttgttccaatatcaa 39472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 11048696 - 11048655
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaatacttc 67  Q
    ||||||||||||||| ||||||||||| |||||||| |||||    
T  11048696 gcaatccttgtctaaattcacttgttcgaatatcaaaacttc 11048655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 39495 - 39535
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccg 126  Q
    |||||||||| |||||||||||||||| ||||| |||||||    
T  39495 ttgatatttgagatgatgaattaacaattactaaccctccg 39535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 17465220 - 17465142
Alignment:
Q  32 cttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||||||||||| || ||| |||||||| ||||| |||||| || |||| ||| |||||||| ||||||||| ||||||    
T  17465220 cttgtctaatttcatttattccaatatcaa-acttcatctttcaatccttcattt-gatatttgagatgatgaaataacaa 17465142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 26 - 147
Target Start/End: Complemental strand, 173130 - 173009
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccctcc 125  Q
    ||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  173130 gcaatccttgtctaatttcactttttccaatatcaaaacttattctttcgatgcttcgctttgatatttgtgatgatgaattaacaagtactaaccctcc 173031  T
Q  126 gttgtcgctttataagtttgat 147  Q
     |||||||||||| ||||||||    
T  173030 attgtcgctttatgagtttgat 173009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 7908911 - 7908794
Alignment:
Q  28 aatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccctccgt 127  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| || ||||     
T  7908911 aatccttgtctaatttcacttgttccaatatcaaaacttcttctttcgatgcttcgctttaatatttgtgatgatgaattaacaaatactaaccttccgc 7908812  T
Q  128 tgtcgctttataagtttg 145  Q
    ||||||||||| ||||||    
T  7908811 tgtcgctttatgagtttg 7908794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 13070165 - 13070042
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccc 122  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||| |||    
T  13070165 ttcgcaatccttgtctaatttcacttgttccaatatcaaaacttcttcttttgatgcttcgatttg-tatttgtgatgatgaattaacaagtactaaccc 13070067  T
Q  123 tccgttgtcgctttataagtttgat 147  Q
    |||| |||||| |||  ||||||||    
T  13070066 tccgctgtcgcattacgagtttgat 13070042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 13418793 - 13418657
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgc-ttcgttttgatatttgtgatgatgaattaac 110  Q
    |||||| ||| || |||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||  |||| |||||||||||||| |||||||    
T  13418793 tattctcatgttttgcaatcgttgtctaatttcacttgttccaatatcaaaacttcttctttcgatgcttttttttttatatttgtgatgataaattaac 13418694  T
Q  111 aaatactagccctccgttgtcgctttataagtttgat 147  Q
    || ||||| ||||||||||||||||||| ||||||||    
T  13418693 aagtactaaccctccgttgtcgctttatgagtttgat 13418657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 42244252 - 42244367
Alignment:
Q  30 tccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccctccgttg 129  Q
    ||||||||||||||||||||||||| |||||| ||||||||||| ||||||||  |||||||||||||||||||||||||||| || || ||||||||||    
T  42244252 tccttgtctaatttcacttgttcaa-tatcaaaacttcttcttttgatgcttcactttgatatttgtgatgatgaattaacaagtattaaccctccgttg 42244350  T
Q  130 tcgctttataagtttga 146  Q
    ||||||||| |||||||    
T  42244351 tcgctttatgagtttga 42244367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 8685531 - 8685664
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||| ||||||||||||||||| |||||||| ||||| || ||||| ||||||||| ||||| || |||||||||||| |||||||||||    
T  8685531 tattctcatgtttcacaatccttgtctaattt-acttgttccaatattaaaacttcatctttcgatacttcgctt-gatatttgtgattatgaattaaca 8685628  T
Q  112 aatactagccctccgttgtcgctttataagtttgat 147  Q
    | ||||| |||| || ||||||||||| | ||||||    
T  8685629 agtactaacccttcgctgtcgctttatgaatttgat 8685664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 17775186 - 17775090
Alignment:
Q  13 attctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaac 110  Q
    ||||| ||| |||||||| ||||| |||||||||||||||||||||||| ||||| ||||||||| ||||   |||||||||||||| ||||||||||    
T  17775186 attctcatgtttcgcaattcttgtttaatttcacttgttcaaatatcaaaacttcatctttcgatacttc-ccttgatatttgtgattatgaattaac 17775090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 19076487 - 19076391
Alignment:
Q  13 attctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaac 110  Q
    ||||| ||| |||||||| ||||| |||||||||||||||||||||||| ||||| ||||||||| ||||   |||||||||||||| ||||||||||    
T  19076487 attctcatgtttcgcaattcttgtttaatttcacttgttcaaatatcaaaacttcatctttcgatacttc-ccttgatatttgtgattatgaattaac 19076391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 10850404 - 10850509
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||||||  |||||||||||||||||||||| ||||| || ||||| ||||||||| |||||  || ||||||||||||||||||||| |    
T  10850404 tattctcatgtttcgcagcccttgtctaatttcacttgttccaatattaaaacttcatctttcgatccttcg-cttaatatttgtgatgatgaattaaaa 10850502  T
Q  112 aatacta 118  Q
    | |||||    
T  10850503 attacta 10850509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 17023631 - 17023547
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaatta 108  Q
    |||||||||||||||||||||||||||||| ||||| || ||||| ||||||||| | |||  || ||||||||||||||||||||    
T  17023631 ttcgcaatccttgtctaatttcacttgttccaatattaaaacttcatctttcgatccatcg-cttaatatttgtgatgatgaatta 17023547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 17042051 - 17041992
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccgttgtcgctttataagtttg 145  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||| |||| ||||||    
T  17042051 ttgatatttgtgatgatgaattaacaaatactaaccctccattgtcgcattatgagtttg 17041992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 22039175 - 22039116
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccgttgtcgctttataagtttg 145  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||| |||| ||||||    
T  22039175 ttgatatttgtgatgatgaattaacaaatactaaccctccgatgtcgcattatgagtttg 22039116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 11577447 - 11577524
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatga 101  Q
    |||||||||||||||||||||||||||||| |||||||| ||||| | ||||||| ||| |  ||||||||||||||||    
T  11577447 ttcgcaatccttgtctaatttcacttgttccaatatcaaaacttcatatttcgatcctttg-cttgatatttgtgatga 11577524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 17051064 - 17051007
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccgttgtcgctttataagtt 143  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||    
T  17051064 ttgatatttgtgatgatgaattaacaaattctaaccctccgttgtcgcattatgagtt 17051007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 27992175 - 27992278
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| |||| |||||||||||||||||| |||||| |||||||| ||||| |||||||||  ||||  |||||||||| ||||||||| |||||    
T  27992175 tattctcatgtttcgtaatccttgtctaatttcatttgttccaatatcaa-acttcatctttcgatctttcg-cttgatatttgagatgatgaaataaca 27992272  T
Q  112 aatact 117  Q
    | ||||    
T  27992273 agtact 27992278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 6237263 - 6237158
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||||||| | |||||||||||||||||||  ||||| || | | | ||||||||| ||||| ||  |||||||||||||||||||||||    
T  6237263 tattctcatgtttcgcaacctttgtctaatttcacttgtttcaatattaaaaatccatctttcgatccttcgctta-atatttgtgatgatgaattaaca 6237165  T
Q  112 aatacta 118  Q
    | |||||    
T  6237164 attacta 6237158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 1993843 - 1993749
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatacta 118  Q
    ||||||| |||||||||||||||||||||| ||||| || ||||| |||||| ||  ||||   | ||| |||||||||||||||||||| |||||    
T  1993843 ttcgcaacccttgtctaatttcacttgttccaatattaaaacttcatctttcaatctttcg-cctaataattgtgatgatgaattaacaattacta 1993749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 1999002 - 1998908
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatacta 118  Q
    ||||||| |||||||||||||||||||||| ||||| || ||||| |||||| ||  ||||   | ||| |||||||||||||||||||| |||||    
T  1999002 ttcgcaacccttgtctaatttcacttgttccaatattaaaacttcatctttcaatctttcg-cctaataattgtgatgatgaattaacaattacta 1998908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 17209915 - 17209856
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccgttgtcgctttataagtttg 145  Q
    |||||||||| |||||||||||||||||||||| |||||||   ||||||||| ||||||    
T  17209915 ttgatatttgagatgatgaattaacaaatactaaccctccgcattcgctttatgagtttg 17209856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 11399272 - 11399234
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  11399272 ttcgcaatccttgtctaaattcacttgttcaaatatcaa 11399234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 17051136 - 17051087
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| ||||||| |||||||||||||||||||||| ||||||||    
T  17051136 tattctcatgtttcgcaacccttgtctaatttcacttgttccaatatcaa 17051087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 22039244 - 22039195
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| |||||||||||||||||||||||||||||  ||||||||    
T  22039244 tattctcatgtttcgcaatccttgtctaatttcacttgtttcaatatcaa 22039195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 15234009 - 15234044
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    ||||||||||||||| ||||||||||||||||||||    
T  15234009 gcaatccttgtctaaattcacttgttcaaatatcaa 15234044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 16034463 - 16034428
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    ||||||||||||||| ||||||||||||||||||||    
T  16034463 gcaatccttgtctaaattcacttgttcaaatatcaa 16034428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 17732944 - 17732979
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    ||||||||||||||| ||||||||||||||||||||    
T  17732944 gcaatccttgtctaaattcacttgttcaaatatcaa 17732979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 19566696 - 19566731
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    ||||||||||||||||||||||||||| ||||||||    
T  19566696 gcaatccttgtctaatttcacttgttcgaatatcaa 19566731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 40846865 - 40846791
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatga 101  Q
    ||||||||||||||  ||||||||||| ||||| || ||||| ||||||||| |||||  || |||||||||||||    
T  40846865 gcaatccttgtctatattcacttgttccaatattaaaacttcatctttcgatccttcg-cttaatatttgtgatga 40846791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 43496592 - 43496553
Alignment:
Q  22 cttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  43496592 cttcgcaatccttgtctaaattcacttgttcgaatatcaa 43496553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 3280227 - 3280189
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  3280227 ttcgcaatccttgtctaaattcacttgttcgaatatcaa 3280189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 13605431 - 13605393
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  13605431 ttcgcaatccttgtctaaattcacttgttccaatatcaa 13605393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 14137450 - 14137488
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  14137450 ttcgcaatccttgtctaaattcacttgttcgaatatcaa 14137488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 20224992 - 20225050
Alignment:
Q  89 atatttgtgatgatgaattaacaaatactagccctccgttgtcgctttataagtttgat 147  Q
    |||||||||||||||||||||||| ||||| ||||||  | |||| |||| ||||||||    
T  20224992 atatttgtgatgatgaattaacaagtactaaccctccactttcgcattatgagtttgat 20225050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 25055410 - 25055372
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  25055410 ttcgcaatccttgtctaaattcacttgttcgaatatcaa 25055372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 36079456 - 36079418
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  36079456 ttcgcaatccttgtctaaattcacttgttcgaatatcaa 36079418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 9762312 - 9762403
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaa 105  Q
    |||||| ||| ||| |||||||| |||||||||| |||||| |||||||| | ||| |||||||||  |||| || ||||||||||| ||||||    
T  9762312 tattctcatgtttcacaatccttatctaatttcatttgttccaatatcaa-atttcatctttcgatcattcgctt-gatatttgtgaggatgaa 9762403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 9774767 - 9774816
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| ||| |||||||| ||||||||||||||||| ||||||||    
T  9774767 tattctcatgtttcacaatccttatctaatttcacttgttccaatatcaa 9774816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 84; Significance: 9e-40; HSPs: 4)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 521154 - 521019
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||||||||| |||||||||||||||||||  |||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  521154 tattctcatgtttcgcaatctttgtctaatttcacttgtttcaatatcaaaacttcttcttttgatgcttcgctttgatatttgtgatgatgaattaaca 521055  T
Q  112 aatactagccctccgttgtcgctttataagtttgat 147  Q
    | ||||| ||||||| |||||| |||| ||||||||    
T  521054 agtactaaccctccgctgtcgcattatgagtttgat 521019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 33264 - 33180
Alignment:
Q  27 caatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||||||||| |||||  |||||||||||||| ||||||||||||    
T  33264 caatccttgtctaatttcacttgttccaatatcaaaacttcatctttcgatccttcg-cttgatatttgtgattatgaattaacaa 33180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 38571 - 38487
Alignment:
Q  27 caatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||||||||| |||||  |||||||||||||| ||||||||||||    
T  38571 caatccttgtctaatttcacttgttccaatatcaaaacttcatctttcgatccttcg-cttgatatttgtgattatgaattaacaa 38487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 82304 - 82364
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcg 83  Q
    ||||||||||||||||||||||  |||||| |||||||| ||||| ||||||||| |||||    
T  82304 ttcgcaatccttgtctaatttctattgttccaatatcaaaacttcatctttcgatccttcg 82364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 4493 - 4619
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| || |||||||||||||||||||| |||||| |||||||| ||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  4493 tattctcatgttttgcaatccttgtctaatttcaattgttctaatatcaaaacttcttctttcgatacttcactttgatatttgtgatgatgaattaaca 4592  T
Q  112 aatactagccctccgttgtcgctttat 138  Q
    | ||||| ||||||| |||||||||||    
T  4593 agtactaaccctccgctgtcgctttat 4619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 44007 - 44045
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  44007 ttcgcaatccttgtctaaattcacttgttcgaatatcaa 44045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 4256299 - 4256434
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  4256299 tattctcatgtttctcaatccttatctaatttcacttgttccaatatcaaaacttcttctttcgatgcttcgctttgatatttttgatgatgaattaaca 4256398  T
Q  112 aatactagccctccgttgtcgctttataagtttgat 147  Q
    | ||||| |||| || |||| | |||| ||||||||    
T  4256399 agtactaacccttcgctgtctcattatgagtttgat 4256434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 4541570 - 4541447
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| || ||||||||||||||||||||||||||  ||||| || ||||| ||||| ||| |||||  |||||||||||||| || ||||| ||    
T  4541570 tattctcatgttttgcaatccttgtctaatttcacttgtttcaatataaaaacttcatctttagatacttcg-cttgatatttgtgattataaattatca 4541472  T
Q  112 aatactagccctccgttgtcgcttt 136  Q
    | ||||| |||||||||||||||||    
T  4541471 agtactaaccctccgttgtcgcttt 4541447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 4982834 - 4982933
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| |||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||| || ||  |||||||||||||| |||||||||||    
T  4982834 tattctcatgtttcgcaatccttatctaatttcacttgttccaatatcaaaacttcatctttcgatactacg-cttgatatttgtgattatgaattaaca 4982932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 11997023 - 11997128
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||||||| |||||||||||||||||||||| ||||| || ||||| ||||||||| |||||   | |||||||||||||||||||||||    
T  11997023 tattctcatgtttcgcaacccttgtctaatttcacttgttccaatattaaaacttcatctttcgatccttcg-cctaatatttgtgatgatgaattaaca 11997121  T
Q  112 aatacta 118  Q
    | |||||    
T  11997122 attacta 11997128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 21005210 - 21005341
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||| |||||||||||||||||||||||||| |||||||| ||| ||  | ||| |   | |  ||||||||||||||||||||||||||    
T  21005210 tattctcatgtttcacaatccttgtctaatttcacttgttccaatatcaaaact-ctgttgtcgctttat-gaattgatatttgtgatgatgaattaaca 21005307  T
Q  112 aatactagccctccgttgtcgctttataagtttg 145  Q
    || |||| ||||||||||||||||||| ||||||    
T  21005308 aacactaaccctccgttgtcgctttatgagtttg 21005341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 38877806 - 38877708
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| | ||| ||| ||||   |||||||||||||||||||| |||||    
T  38877806 tattctaatgtttcgcaatccttgtctaatttcacttgttccaatatcaa-acttcatttttggatccttc-acttgatatttgtgatgatgaaataaca 38877709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 679182 - 679279
Alignment:
Q  13 attctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    ||||| ||| ||| |||||||||||||||||||||||||| | |||||| ||||| ||||||||| |||||  |||||||||||||||||||| ||||||    
T  679182 attctcatgtttcacaatccttgtctaatttcacttgttccagtatcaa-acttcatctttcgatccttcg-cttgatatttgtgatgatgaaataacaa 679279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 15523415 - 15523331
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||||||||||| |||||||||||| |||||||| ||||| ||||||||| |||||  |||||||||||||||||||| ||||||    
T  15523415 gcaatccttgtctactttcacttgttccaatatcaa-acttcatctttcgatccttcg-cttgatatttgtgatgatgaaataacaa 15523331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 39389138 - 39389033
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||||||| |||||||||||||||||||||| ||||| || ||||| ||||||||| |||||     |||||||||||||||||||||||    
T  39389138 tattctcatgtttcgcaacccttgtctaatttcacttgttccaatattaaaacttcatctttcgatccttcg-cccaatatttgtgatgatgaattaaca 39389040  T
Q  112 aatacta 118  Q
    | |||||    
T  39389039 attacta 39389033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 4465486 - 4465570
Alignment:
Q  27 caatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||||||||||||||||||||||| ||||| || ||||| ||||||||| |||||  ||||||||| |||| ||||||||||||    
T  4465486 caatccttgtctaatttcacttgttccaatattaaaacttcatctttcgatccttcg-cttgatatttatgattatgaattaacaa 4465570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 1864683 - 1864605
Alignment:
Q  32 cttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||||||||||| |||||| |||||||| ||||| ||||||||| ||||| ||||||||||| ||||||||| ||||||    
T  1864683 cttgtctaatttcatttgttccaatatcaa-acttcatctttcgatccttcg-tttgatatttgagatgatgaaataacaa 1864605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 12348359 - 12348309
Alignment:
Q  27 caatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgat 77  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  12348359 caatccttgtctaatttcacttgttccaatatcaaaacttcatctttcgat 12348309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 17911976 - 17911891
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaa 109  Q
    ||||||||||||||||||  |||||||||| |||||||| | ||| ||||||||| ||||   |||||||||||||| |||||||||    
T  17911976 ttcgcaatccttgtctaacatcacttgttccaatatcaaaatttcatctttcgatccttc-acttgatatttgtgattatgaattaa 17911891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 30063659 - 30063736
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatga 101  Q
    |||||||||||||||||||||||||||||| |||||||| | ||| | ||| ||| |||||  ||||||||||||||||    
T  30063659 ttcgcaatccttgtctaatttcacttgttccaatatcaaaatttcatattttgatccttcg-cttgatatttgtgatga 30063736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 48713839 - 48713728
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccc 122  Q
    |||||||||||||||| | ||||||||||| |||||||| |||||  |||||| |   | |  |||||||||| |||||||||||||||| ||||| |||    
T  48713839 ttcgcaatccttgtctcaattcacttgttccaatatcaaaacttccactttcgcttgat-gaattgatatttgagatgatgaattaacaattactaaccc 48713741  T
Q  123 tccgttgtcgctt 135  Q
    ||| || ||||||    
T  48713740 tccattttcgctt 48713728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 9193700 - 9193751
Alignment:
Q  10 attattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||| ||| ||||||| |||||||||||||||||||||| ||||||||    
T  9193700 attattctcatgtttcgcaacccttgtctaatttcacttgttccaatatcaa 9193751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 9562339 - 9562288
Alignment:
Q  10 attattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||| ||| ||||||| |||||||||||||||||||||| ||||||||    
T  9562339 attattctcatgtttcgcaacccttgtctaatttcacttgttccaatatcaa 9562288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 14310753 - 14310674
Alignment:
Q  263 atgaatttttaagg-ctaaaaacatatataaccaattcctcatatacgtataattactcattgaagttcataatccgcac 341  Q
    |||||||||||| | |||||||| ||||||||||||||   |||||  |||||||||||||| ||| |||||||||||||    
T  14310753 atgaatttttaatgactaaaaacttatataaccaattctgtatatatttataattactcattaaaggtcataatccgcac 14310674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 6257210 - 6257259
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| |||||||||||||| ||||||||||||||| ||||||||    
T  6257210 tattctcatgtttcgcaatccttgtttaatttcacttgttctaatatcaa 6257259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 8786972 - 8787021
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| ||||||| |||||||||||||||||||||| ||||||||    
T  8786972 tattctcatgtttcgcaacccttgtctaatttcacttgttccaatatcaa 8787021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 8836969 - 8836920
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| ||| |||||||||||||||||||||||||| ||||||||    
T  8836969 tattctcatgtttcacaatccttgtctaatttcacttgttccaatatcaa 8836920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 19515049 - 19515098
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| |||||||||||||| ||||||||||||||| ||||||||    
T  19515049 tattctcatgtttcgcaatccttgtttaatttcacttgttccaatatcaa 19515098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 33610122 - 33610073
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| ||||||| |||||||||||||||||||||| ||||||||    
T  33610122 tattctcatgtttcgcaacccttgtctaatttcacttgttccaatatcaa 33610073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 14925896 - 14925818
Alignment:
Q  32 cttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||||||| ||| |||||| ||||| || ||||| ||||||||| |||||||| |||||||| ||||||||| ||||||    
T  14925896 cttgtctaatatcatttgttccaatattaa-acttcatctttcgatccttcgttt-gatatttgagatgatgaaataacaa 14925818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 15349362 - 15349284
Alignment:
Q  32 cttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    |||||||||| ||| |||||| ||||| || ||||| ||||||||| |||||||| |||||||| ||||||||| ||||||    
T  15349362 cttgtctaatatcatttgttccaatattaa-acttcatctttcgatccttcgttt-gatatttgagatgatgaaataacaa 15349284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 39271548 - 39271426
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaaatactagccc 122  Q
    ||||||||||| |||||| ||||||||||| |||||||| ||| |  ||||||||   | |  |||||||||| |||||||||||||||| ||||| |||    
T  39271548 ttcgcaatcctagtctaaattcacttgttcgaatatcaaaactcca-ctttcgatttat-gaattgatatttgagatgatgaattaacaattactaaccc 39271451  T
Q  123 tccgttgtcgctttataagtttgat 147  Q
    |||  | |||||| || ||||||||    
T  39271450 tccactttcgcttcatgagtttgat 39271426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 16076524 - 16076559
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    ||||||||||||||| ||||||||||||||||||||    
T  16076524 gcaatccttgtctaaattcacttgttcaaatatcaa 16076559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 117
Target Start/End: Original strand, 19515121 - 19515152
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatact 117  Q
    ||||||||||||||||||||||||||||||||    
T  19515121 ttgatatttgtgatgatgaattaacaaatact 19515152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 1614306 - 1614252
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgat 77  Q
    |||||||||||||||||  ||||||||||| ||||| || ||||| |||||||||    
T  1614306 ttcgcaatccttgtctatattcacttgttccaatattaaaacttcatctttcgat 1614252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 6257287 - 6257341
Alignment:
Q  91 atttgtgatgatgaattaacaaatactagccctccgttgtcgctttataagtttg 145  Q
    ||||||||||||||||||||||||| || ||||| ||  ||||||||| ||||||    
T  6257287 atttgtgatgatgaattaacaaatattaaccctctgtgttcgctttatgagtttg 6257341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 16896960 - 16897014
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgat 77  Q
    |||||||||||||||||  ||||||||||| ||||| || ||||| |||||||||    
T  16896960 ttcgcaatccttgtctatgttcacttgttccaatattaaaacttcatctttcgat 16897014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 4091103 - 4091054
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| ||| ||||||| ||||||||||||||||||| || ||||||||    
T  4091103 tattctcatgtttcgcaacccttgtctaatttcacttggtccaatatcaa 4091054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 2307260 - 2307220
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttc 52  Q
    |||||| ||| |||||||||||||||||||||||| |||||    
T  2307260 tattctcatgtttcgcaatccttgtctaatttcacatgttc 2307220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 22421 - 22522
Alignment:
Q  10 attattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaa 109  Q
    |||||||| ||| ||||| |||||||||||||||||||||||| |||||||| ||||| ||||||||| |||||  |||||||||||||| | |||||||    
T  22421 attattctcatgtttcgctatccttgtctaatttcacttgttccaatatcaaaacttcatctttcgattcttcg-cttgatatttgtgattaagaattaa 22519  T
Q  110 caa 112  Q
    |||    
T  22520 caa 22522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 53923 - 54021
Alignment:
Q  13 attctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    ||||| ||| ||||||||||||| || ||||||||| ||| ||||||||   ||| ||||||||| | ||| || |||||||||||||||||||||||||    
T  53923 attctcatgtttcgcaatccttgcctgatttcactttttccaatatcaaattttcatctttcgatccatcgctt-gatatttgtgatgatgaattaacaa 54021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0855 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 3870 - 3772
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||| |||| | |||||||||||||||||||| |||||    
T  3870 tattctcatgtttcacaatccttgtctaatttcacttgttccaatatcaa-acttcatctttcgatccttc-tcttgatatttgtgatgatgaaataaca 3773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0847 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 4035 - 3937
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| ||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||| |||| | |||||||||||||||||||| |||||    
T  4035 tattctcatgtttcacaatccttgtctaatttcacttgttccaatatcaa-acttcatctttcgatccttc-tcttgatatttgtgatgatgaaataaca 3938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 14481 - 14396
Alignment:
Q  26 gcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaacaa 112  Q
    ||||||||||| |||||||| |||||| |||||||| ||||| ||||||||| |||||  |||||||||||||| ||||||||||||    
T  14481 gcaatccttgtataatttcatttgttccaatatcaaaacttcatctttcgatacttcg-cttgatatttgtgattatgaattaacaa 14396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 22109 - 22240
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaattaaca 111  Q
    |||||| ||| |||||||||||||||||||||||||||||| |||||||| ||| |  || ||| |   | |  ||||||||||||||||||||||||||    
T  22109 tattctcatgtttcgcaatccttgtctaatttcacttgttccaatatcaaaactccg-ctgtcgctttat-gaattgatatttgtgatgatgaattaaca 22206  T
Q  112 aatactagccctccgttgtcgctttataagtttg 145  Q
    ||||||| ||||||  ||||| ||||| ||||||    
T  22207 aatactaaccctccactgtcggtttatgagtttg 22240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 168592 - 168503
Alignment:
Q  14 ttctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaatacttcttctttcgatgcttcgttttgatatttgtgatgatgaa 105  Q
    |||| ||| |||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||| ||| |  ||||||||||||||||||||    
T  168592 ttctcatgtttcgcaatccttgtctaatttcacttgttccaatatcaa-acttcatcttttgatcctttg-cttgatatttgtgatgatgaa 168503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 6463 - 6522
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccgttgtcgctttataagtttg 145  Q
    ||||||||||||||||||||||||||||||||| |||||||   ||||||||| ||||||    
T  6463 ttgatatttgtgatgatgaattaacaaatactatccctccgcgttcgctttatgagtttg 6522  T

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Target: scaffold0713; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 6402 - 6440
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  6402 ttcgcaatccttgtctaatttcacttgttccaatatcaa 6440  T

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Target: scaffold0362 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 8907 - 8956
Alignment:
Q  12 tattctaatgcttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  8907 tattctcatgctttgcaatccttgtctaatttcacttgttccaatatcaa 8956  T

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Target: scaffold0362; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 8979 - 9019
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccg 126  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  8979 ttgatatttgtgatgatgaattaaaaaatactaaccctccg 9019  T

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Target: scaffold0049 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 14311 - 14349
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14311 ttcgcaatccttgtctaaattcacttgttcaaatatcaa 14349  T

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Target: scaffold0773 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0773
Description:

Target: scaffold0773; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 1508 - 1464
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaatacttc 67  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||    
T  1508 ttcgcaatccttgtctaaattcacttgttcgaatatcaaaacttc 1464  T

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Target: scaffold0278 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 12239 - 12277
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  12239 ttcgcaatccttgtctaaattcacttgttcgaatatcaa 12277  T

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Target: scaffold0197 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 8524 - 8562
Alignment:
Q  23 ttcgcaatccttgtctaatttcacttgttcaaatatcaa 61  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  8524 ttcgcaatccttgtctaaattcacttgttcgaatatcaa 8562  T

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Target: scaffold1092 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1092
Description:

Target: scaffold1092; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 1440 - 1489
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccgttgtcgctt 135  Q
    |||||||||| |||||||||||||||| ||||| |||||| || ||||||    
T  1440 ttgatatttgagatgatgaattaacaattactaaccctccattttcgctt 1489  T

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Target: scaffold1058 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1058
Description:

Target: scaffold1058; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 2817 - 2866
Alignment:
Q  86 ttgatatttgtgatgatgaattaacaaatactagccctccgttgtcgctt 135  Q
    |||||||||| |||||||||||||||| ||||| |||||| || ||||||    
T  2817 ttgatatttgagatgatgaattaacaattactaaccctccattttcgctt 2866  T

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