View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1431_low_8 (Length: 394)
Name: NF1431_low_8
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1431_low_8 |
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| [»] scaffold0321 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 24 - 382
Target Start/End: Original strand, 20809978 - 20810326
Alignment:
| Q |
24 |
accacactataaataagaggcttcatgcctctcattcaataacttcttcatccccactttacaacgccgaaagagaattatgtaagctctgatttctnnn |
123 |
Q |
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| T |
20809978 |
accacactataaataagaggcttcatgcctctcattcaataacttcttcatccccactttacaacgcccaaagagaactacgtaagctctgatt------ |
20810071 |
T |
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| Q |
124 |
nnnnnnnnnnntacgtaggatcagggatcctccctatcgagctttcatcaaaattcccaaccttacccattcgttgtcggcgagatactcctcctctcac |
223 |
Q |
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| T |
20810072 |
----aaaaaaatacgcaggatcagggttcctccctatcgagctatcatcaaaattcccaaccttacccattcgctgtcggcgagatactcctcctctcac |
20810167 |
T |
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| Q |
224 |
cgtcatggaaggagggtcggtacttttgtacttagaacgagtacaactaataacaaaacttagaatattttaggcttaaacaaccatagaaactataggc |
323 |
Q |
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| T |
20810168 |
cgtcatggaaggagggtcggtacttttgtacttagaacgagtacaactaataacaaaatttagaatattttaggcttaaacaaccatagaaactataggc |
20810267 |
T |
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| Q |
324 |
tataaactagcaatccaagaaagtacagtgagtgaaatttataactaggtggaaatatt |
382 |
Q |
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| T |
20810268 |
tataaactaacaatccaacaaagtatagtgagtgaaatttataactaggtggaaatatt |
20810326 |
T |
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Target: scaffold0321 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 7745 - 7684
Alignment:
| Q |
200 |
tcggcgagatactcctcctctcaccgtcatggaaggagggtcggtacttttgtacttagaac |
261 |
Q |
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| T |
7745 |
tcggcgagatactcctcctctcactaccatggagagggggttggtactcttgtacttagaac |
7684 |
T |
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