View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1431_low_9 (Length: 372)
Name: NF1431_low_9
Description: NF1431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1431_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 42 - 352
Target Start/End: Original strand, 7353209 - 7353535
Alignment:
| Q |
42 |
ttaaaagtatactatttttagtcagtatataccaactttgttgcaatgtgagatttgtt-----------------cccactatgagcttggtgcaaaga |
124 |
Q |
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| T |
7353209 |
ttaaaagtatactatttttagtcagtatatatcaactttgttacaatgtgagatttgttaaagtatgagatttgttcccaatatgagcttggtgcaaa-a |
7353307 |
T |
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| Q |
125 |
gtctatagtcacaatataataagcaaattagaatatatactaacagtgttcacttttgtttgacatttagagtaccaacaatgaaatggttggtttgcag |
224 |
Q |
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| T |
7353308 |
gtctatagtcacaatatactaagcaaattagaatatatactaacagtgttcacttttgtttgacatttagagtaccaacaatgaaatggttggtttgaag |
7353407 |
T |
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| Q |
225 |
aatttctgcagttcaatccaagcgtctattacgactttggatgtgatagccaaatctaaaggcaccgagtcattgccaaactgtgaaaaggaatcaacaa |
324 |
Q |
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| T |
7353408 |
aatttctgcagttcaatccaagcgtctattgcggctttggatgtgatagccaaatctaaaggcactgggtccttgccaaactgtgaaaaggaatcaacaa |
7353507 |
T |
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| Q |
325 |
tgaagaatgttgaacatttggataccgt |
352 |
Q |
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| T |
7353508 |
tgaagaatgttgaacatttggataccgt |
7353535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 173 - 357
Target Start/End: Original strand, 15493310 - 15493494
Alignment:
| Q |
173 |
ttcacttttgtttgacatttagagtaccaacaatgaaatggttggtttgcagaatttctgcagttcaatccaagcgtctattacgactttggatgtgata |
272 |
Q |
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| T |
15493310 |
ttcacctttgtttgacatttagagtagcaacaatgaaatggttggtttgaagaccttcggcaatttaatctcatcatctattgtcactttggaagggttt |
15493409 |
T |
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| Q |
273 |
gccaaatctaaaggcaccgagtcattgccaaactgtgaaaaggaatcaacaatgaagaatgttgaacatttggataccgtgaatg |
357 |
Q |
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| T |
15493410 |
gccaaatctaaaggcattgggtcgtcgtcaaacattgaaaagtaaacaaatttggagaatgttgaacatttggataccgagaatg |
15493494 |
T |
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