View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14320_high_10 (Length: 267)
Name: NF14320_high_10
Description: NF14320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14320_high_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 115203 - 114937
Alignment:
| Q |
1 |
tctaatgaatctaacaagttccatgtaactgttgtgagataattcttgtttatgaataattacttttacttgtaatacaagtaagcagtgaatcgattcg |
100 |
Q |
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| T |
115203 |
tctaatgaatctaacaagttccatgtaactgttgtgagataattcttgtttatgaataattacttttacttgtaatacaagtaagcagtgaatcgattcg |
115104 |
T |
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| Q |
101 |
tgaattgattcatattgtgcaattagctgttttagttagtatgctagtgacttgttgaacaagtcagtggagttagttagtttattgaggcagttagttg |
200 |
Q |
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| T |
115103 |
tgaattgattcatattgtgcaattagctgttttagttagtatgctagtgacttgttgaacaagtcagtggagttagttagtttattgaggcagttagttg |
115004 |
T |
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| Q |
201 |
gattgcgtaatcgtgtcatgaactttgtatcatgattcatattttcatgtaattcatccatttcatt |
267 |
Q |
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| T |
115003 |
gatttcgtaatcgtgtcatgaactttgtatcatgattcatattttcatgtaattcatccatttcatt |
114937 |
T |
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Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 36329914 - 36330092
Alignment:
| Q |
1 |
tctaatgaatctaacaagttccatgtaactgttgtgagataattcttgtttatgaataattacttttacttgtaatacaagtaagcagtgaatcgattcg |
100 |
Q |
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||||| ||||||||||||||| || ||| |||||||||||||||| | |||| |||||||||| ||||||| |||||||| ||||||||||||| |
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| T |
36329914 |
tctaacgaatctaacaagttctatctaattgttgtgagataattcatatttaggaataattac------ttgtaattcaagtaagtagtgaatcgattca |
36330007 |
T |
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| Q |
101 |
tgaattgattcatattgtgcaattagctgttttagttagtatgctagtgacttgttgaacaagtcagtggagttagttagtttattgag |
189 |
Q |
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| T |
36330008 |
tgaattgatttatattgtgcaaataactgttttagttagt----tagtgacttgttgaacaagtcagaggagttacttagtttgttgag |
36330092 |
T |
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