View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14320_high_16 (Length: 229)
Name: NF14320_high_16
Description: NF14320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14320_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 114682 - 114545
Alignment:
| Q |
19 |
ttgttgtagaaaggagggttgtgaatctacaaccttgatttctggagaatgttgaagaatagttttattatttaagtatgctaaggagtcacttgatgat |
118 |
Q |
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| T |
114682 |
ttgttgtagaaaggagggttgtgaatctacaaccttcctttctggagaatgttgaagaatagttttattatttaagtatgctaaggagtcacttgatgat |
114583 |
T |
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| Q |
119 |
cttctatgagtcttgttgctgcatacagtactaggctg |
156 |
Q |
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| T |
114582 |
cttctatgagtcttgttgctgcatacagtactaggctg |
114545 |
T |
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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 114531 - 114499
Alignment:
| Q |
182 |
tcatcatcaaggagatctttcaaccaacagggt |
214 |
Q |
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| T |
114531 |
tcatcatcaaggagatctttcaaccaacagggt |
114499 |
T |
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