View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14320_high_4 (Length: 420)
Name: NF14320_high_4
Description: NF14320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14320_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 55017221 - 55016815
Alignment:
| Q |
1 |
tggggaatttggaaccggcaaccacctaaaagcaagaaccatttttgccaacaacatgtttatatgcaaagtcccgaatgtccatgctggacaaatcctc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
55017221 |
tggggaatttggaaccggcaaccacctaaaagcaagaaccattttggccaacaacatgtttatatgcaaagtccctaatgtccatgctggacaaatcctc |
55017122 |
T |
|
| Q |
101 |
ctcccagcaccaaacggcatcatcttcatctctttagttcctgtaatatcaacatcaaccccatccccattcaaaaacctctcgggtcgaaacacatccg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55017121 |
ctcccagcaccaaacggcatcatcttcatctctttagttcctgtaatatcaacatcaaccccatccccattcaaaaacctctcgggtcgaaacacatccg |
55017022 |
T |
|
| Q |
201 |
gatccttccaggtatttggattttctgacaaccaagccgtgtaaaactccacactagcatctgccggaatagtgtatccaccaagctttgtctcctccgt |
300 |
Q |
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| T |
55017021 |
gatccttccaggtatttggattttctgacaaccaagccgtgtaaaactccacactagcatctgccggaatagtgtatccaccaagctttgtctcctccgt |
55016922 |
T |
|
| Q |
301 |
agctgcgtgtgaaagcacaaaatggctaggaggatgacgccggaaagtttccttcacaattgcacatagataaggcattttttcaacgtcactgtccatg |
400 |
Q |
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| T |
55016921 |
agccgcgtgcgaaagcacaaaatggctaggaggatgacgccggaaagtttccttcacaattgcacatagataaggcattttttcaacgtcactgtccatg |
55016822 |
T |
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| Q |
401 |
acaatac |
407 |
Q |
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||||||| |
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| T |
55016821 |
acaatac |
55016815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 41127354 - 41127291
Alignment:
| Q |
89 |
ggacaaatcctcctcccagcaccaaacggcatcatcttcatctctttagttcctgtaatatcaa |
152 |
Q |
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| T |
41127354 |
ggacaaattctcctcccaactccaaacggcatcatctttatctctttagtcccggtaatatcaa |
41127291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 26494939 - 26494893
Alignment:
| Q |
89 |
ggacaaatcctcctcccagcaccaaacggcatcatcttcatctcttt |
135 |
Q |
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| T |
26494939 |
ggacaaatcctcctccctgctccaaacggcatcatctttatctcttt |
26494893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 2327327 - 2327264
Alignment:
| Q |
89 |
ggacaaatcctcctcccagcaccaaacggcatcatcttcatctctttagttcctgtaatatcaa |
152 |
Q |
| |
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|||||||| ||||| ||||| ||||||||||||||||| ||||||||| | ||||||||||||| |
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| T |
2327327 |
ggacaaattctcctaccagctccaaacggcatcatcttgatctctttactccctgtaatatcaa |
2327264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 2331042 - 2330979
Alignment:
| Q |
89 |
ggacaaatcctcctcccagcaccaaacggcatcatcttcatctctttagttcctgtaatatcaa |
152 |
Q |
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|||||||| ||||||||||| ||||| ||||||||||| ||||||||| |||||||||| |||| |
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| T |
2331042 |
ggacaaattctcctcccagctccaaatggcatcatctttatctctttacttcctgtaatgtcaa |
2330979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 2294159 - 2294096
Alignment:
| Q |
89 |
ggacaaatcctcctcccagcaccaaacggcatcatcttcatctctttagttcctgtaatatcaa |
152 |
Q |
| |
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|||||||| || || ||||| ||||||||||||||||| ||||||||| |||||||||| |||| |
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| T |
2294159 |
ggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctgtaatgtcaa |
2294096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 2321474 - 2321411
Alignment:
| Q |
89 |
ggacaaatcctcctcccagcaccaaacggcatcatcttcatctctttagttcctgtaatatcaa |
152 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||||||| ||||||||| | ||| ||||||||| |
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| T |
2321474 |
ggacaaattctccttccagctccaaacggcatcatctttatctctttactccctataatatcaa |
2321411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 2310490 - 2310436
Alignment:
| Q |
89 |
ggacaaatcctcctcccagcaccaaacggcatcatcttcatctctttagttcctg |
143 |
Q |
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|||||||| || || ||||| ||||||||||||||||| ||||||||| |||||| |
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| T |
2310490 |
ggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctg |
2310436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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