View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14320_high_9 (Length: 281)
Name: NF14320_high_9
Description: NF14320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14320_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 51 - 264
Target Start/End: Original strand, 27077171 - 27077384
Alignment:
| Q |
51 |
gggcctcatctaatagcaaataagcttgtaaaaatcaaagtaacgttcttttgttttcataagtctcacatcggaagtgggtacacaatacatggcaagc |
150 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| ||||||||| |
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| T |
27077171 |
gggcctcatcggatagcaaataagcttgtaaatatcaaagtaacattcttttgttttcataaatcccacatcggaagtgggtacacaatagatggcaagc |
27077270 |
T |
|
| Q |
151 |
tttgcctataaataaatgatgcatatgctacactgttcaaggtagtggtagagacctaatttcactacggtgaattttgtgttttcctctatcaatttat |
250 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
27077271 |
tttgcctataaataaatgatgcatatgctgcactgttcaaggtagtggtagagacccaatttcactatggtgaattttgtgtttccctctatcaatttat |
27077370 |
T |
|
| Q |
251 |
ttgtttaaattgtg |
264 |
Q |
| |
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|||||||||||||| |
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| T |
27077371 |
ttgtttaaattgtg |
27077384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 51 - 264
Target Start/End: Complemental strand, 7841250 - 7841037
Alignment:
| Q |
51 |
gggcctcatctaatagcaaataagcttgtaaaaatcaaagtaacgttcttttgttttcataagtctcacatcggaagtgggtacacaatacatggcaagc |
150 |
Q |
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||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| |||| |||| ||||||||| |
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| T |
7841250 |
gggccacaactaatagcaaataagcttgtaaatatcaaagtaacattcttttgttttcataagttccacatcggaagtggatacataatagatggcaagc |
7841151 |
T |
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| Q |
151 |
tttgcctataaataaatgatgcatatgctacactgttcaaggtagtggtagagacctaatttcactacggtgaattttgtgttttcctctatcaatttat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
7841150 |
tttgcctataaataaatgatgcatatgctacactgttcaaggtagtggtagagacccaatttcactacggtaaattttgtgtttccctctatcaatttat |
7841051 |
T |
|
| Q |
251 |
ttgtttaaattgtg |
264 |
Q |
| |
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|||||||||||||| |
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| T |
7841050 |
ttgtttaaattgtg |
7841037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 62 - 264
Target Start/End: Complemental strand, 50445985 - 50445781
Alignment:
| Q |
62 |
aatagcaaataagcttgtaaaaatcaaagtaacgttctttt--gttttcataagtctcacatcggaagtgggtacacaatacatggcaagctttgcctat |
159 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| || |
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| T |
50445985 |
aatagcaaataagcttgtaaatatcaaagtaacattcttttttgttttcataagtcccacatcggcagtgggtacacaatagatggcaagctttgccaat |
50445886 |
T |
|
| Q |
160 |
aaataaatgatgcatatgctacactgttcaaggtagtggtagagacctaatttcactacggtgaattttgtgttttcctctatcaatttatttgtttaaa |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
50445885 |
aaataaatgatgcatatgctacactgttcaaggtagtggtagagacccaatttcactacagtgaattttgtgtttccctctatcaatttatttgtttaaa |
50445786 |
T |
|
| Q |
260 |
ttgtg |
264 |
Q |
| |
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||||| |
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| T |
50445785 |
ttgtg |
50445781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 51 - 264
Target Start/End: Complemental strand, 51994584 - 51994369
Alignment:
| Q |
51 |
gggcctcatctaatagcaaataagcttgtaaaaatcaaagtaacgttcttttgttttcataagtctcacatcggaagtgggtacaca--atacatggcaa |
148 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| | |||||| |||||||||||| ||| ||||||| |
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| T |
51994584 |
gggccacatctaatagcaaataagcttgtaaatatcaaagtaacattcttttgttttcataagtcccccatcgggagtgggtacacacaatagatggcaa |
51994485 |
T |
|
| Q |
149 |
gctttgcctataaataaatgatgcatatgctacactgttcaaggtagtggtagagacctaatttcactacggtgaattttgtgttttcctctatcaattt |
248 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| ||||| |
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| T |
51994484 |
gctttgcctataaataaatcatgcatatgctacactgttcaaggtagtggtagagacccaatttcactacggcgaattttgtgtttccctctattaattt |
51994385 |
T |
|
| Q |
249 |
atttgtttaaattgtg |
264 |
Q |
| |
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|||||||||||||||| |
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| T |
51994384 |
atttgtttaaattgtg |
51994369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 263
Target Start/End: Complemental strand, 31491338 - 31491155
Alignment:
| Q |
84 |
atcaaagtaacgttcttttgttttcata--agtctcacatcggaagtgggtacacaatacatggcaagctttgcctataaataaatgatgcatatgctac |
181 |
Q |
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||||||||| | ||| |||||||||||| ||||||||||||||||||| || |||||| | ||||||||||||||||||||| || ||||||| || |
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| T |
31491338 |
atcaaagtagcattcctttgttttcatataagtctcacatcggaagtggataaacaatagagggcaagctttgcctataaatatatattgcatatatgac |
31491239 |
T |
|
| Q |
182 |
actgttcaaggtagtggtagagacctaatttcactacggtgaattt-tgtgtt-ttcctctatcaatttatttgtttaaattgt |
263 |
Q |
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||| |||||||||||||| |||||| | ||||||||| ||||||| |||||| | |||||||||| ||||||||||||||||| |
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| T |
31491238 |
actcttcaaggtagtggtggagacccagtttcactacaatgaatttatgtgttgtccctctatcaacttatttgtttaaattgt |
31491155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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